6I0X
Porphyromonas gingivalis peptidylarginine deminase (PPAD) mutant G231N/E232T/N235D in complex with Cl-amidine.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Peptidylarginine deiminase | polymer | 438 | 49095.7 | 2 | UniProt (Q9RQJ2) Pfam (PF04371) | Porphyromonas gingivalis (strain ATCC BAA-308 / W83) | |
| 2 | C, E, I (A, B) | SODIUM ION | non-polymer | 23.0 | 3 | Chemie (NA) | |||
| 3 | D, J (A, B) | N-[(1S)-1-(AMINOCARBONYL)-4-(ETHANIMIDOYLAMINO)BUTYL]BENZAMIDE | non-polymer | 276.3 | 2 | Chemie (BFB) | |||
| 4 | F, G, H, K, L (A, B) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
| 5 | M, N (A, B) | water | water | 18.0 | 1145 | Chemie (HOH) |
Sequence modifications
A, B: 44 - 475 (UniProt: Q9RQJ2)
| PDB | External Database | Details |
|---|---|---|
| Asn 231 | Gly 231 | engineered mutation |
| Thr 232 | Glu 232 | engineered mutation |
| Asp 235 | Asn 235 | engineered mutation |
| His 476 | - | expression tag |
| His 477 | - | expression tag |
| His 478 | - | expression tag |
| His 479 | - | expression tag |
| His 480 | - | expression tag |
| His 481 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 98191.3 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 1082.1 | |
| All* | Total formula weight | 99273.4 |
