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6I0X

Porphyromonas gingivalis peptidylarginine deminase (PPAD) mutant G231N/E232T/N235D in complex with Cl-amidine.

Functional Information from GO Data
ChainGOidnamespacecontents
A0004668molecular_functionprotein-arginine deiminase activity
A0009446biological_processputrescine biosynthetic process
B0004668molecular_functionprotein-arginine deiminase activity
B0009446biological_processputrescine biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue NA A 501
ChainResidue
AASP147
APHE148
AASP158
AHOH804
AHOH832

site_idAC2
Number of Residues17
Detailsbinding site for residue BFB A 502
ChainResidue
AARG154
AGLY169
AGLY182
ATYR233
AILE234
AHIS236
AASP238
ATHR346
ACYS351
ALYS359
AHOH605
AHOH771
AHOH987
ATRP127
AARG129
AASP130
AARG152

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 503
ChainResidue
AASP124
AASN389
AHOH651
AHOH680
AHOH869
AHOH1034

site_idAC4
Number of Residues7
Detailsbinding site for residue GOL A 504
ChainResidue
AASN247
ATRP278
AGLU283
APRO450
AASP456
APHE458
AHOH642

site_idAC5
Number of Residues7
Detailsbinding site for residue GOL A 505
ChainResidue
AILE149
AASN202
ASER204
AHOH672
AHOH704
AHOH735
AHOH751

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL A 506
ChainResidue
AVAL226
AGLN227
AASP266
AHOH721
AHOH951
AHOH964

site_idAC7
Number of Residues5
Detailsbinding site for residue NA B 501
ChainResidue
BASP147
BPHE148
BASP158
BHOH744
BHOH832

site_idAC8
Number of Residues6
Detailsbinding site for residue GOL B 503
ChainResidue
BTYR399
BTYR422
BPHE424
BTHR425
BLEU427
BHOH852

site_idAC9
Number of Residues7
Detailsbinding site for residue GOL B 504
ChainResidue
BLYS176
BASN202
BSER204
BHOH634
BHOH679
BHOH726
BHOH729

site_idAD1
Number of Residues23
Detailsbinding site for Di-peptide BFB B 502 and CYS B 351
ChainResidue
BTRP127
BARG129
BASP130
BARG152
BARG154
BGLY169
BGLY182
BTYR233
BILE234
BHIS236
BASP238
BASN297
BTHR346
BASP347
BALA348
BLEU349
BHIS350
BARG352
BTHR353
BLYS359
BHOH614
BHOH764
BHOH766

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Amidino-cysteine intermediate => ECO:0000250
ChainResidueDetails
ACYS351
BCYS351

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PDB entries from 2024-07-10

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