6HJX
X-ray structure of a pentameric ligand gated ion channel from Erwinia chrysanthemi (ELIC) 7'C pore mutant (L238C) in complex with nanobody 72
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Cys-loop ligand-gated ion channel | polymer | 306 | 35244.1 | 1 | UniProt (P0C7B7) Pfam (PF02931) In PDB | Dickeya chrysanthemi (Pectobacterium chrysanthemi) | ELIC |
2 | B | Cys-loop ligand-gated ion channel | polymer | 309 | 35555.4 | 1 | UniProt (P0C7B7) Pfam (PF02931) In PDB | Dickeya chrysanthemi (Pectobacterium chrysanthemi) | ELIC |
3 | C | Cys-loop ligand-gated ion channel | polymer | 312 | 35880.8 | 1 | UniProt (P0C7B7) Pfam (PF02931) In PDB | Dickeya chrysanthemi (Pectobacterium chrysanthemi) | ELIC |
4 | D | Cys-loop ligand-gated ion channel | polymer | 310 | 35726.7 | 1 | UniProt (P0C7B7) Pfam (PF02931) In PDB | Dickeya chrysanthemi (Pectobacterium chrysanthemi) | ELIC |
5 | E | Cys-loop ligand-gated ion channel | polymer | 307 | 35359.1 | 1 | UniProt (P0C7B7) Pfam (PF02931) In PDB | Dickeya chrysanthemi (Pectobacterium chrysanthemi) | ELIC |
6 | F, G, H, I, J | nanobody 72 | polymer | 124 | 13368.0 | 5 | Lama glama | ||
7 | A, B, D, E | HEXAETHYLENE GLYCOL | non-polymer | 282.3 | 4 | Chemie (P6G) | |||
8 | A | PHOSPHATIDYLETHANOLAMINE | non-polymer | 734.0 | 1 | Chemie (PTY) | |||
9 | A, B, C, D, E | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 5 | Chemie (LMT) | |||
10 | C | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID | non-polymer | 195.2 | 1 | Chemie (MES) | |||
11 | C | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
12 | water | water | 18.0 | 308 | Chemie (HOH) |
Sequence modifications
A: 9 - 314 (UniProt: P0C7B7)
B: 8 - 314 (UniProt: P0C7B7)
C: 8 - 317 (UniProt: P0C7B7)
D: 9 - 318 (UniProt: P0C7B7)
E: 8 - 314 (UniProt: P0C7B7)
PDB | External Database | Details |
---|---|---|
Gly 164 | - | insertion |
Cys 238 | Leu 237 | engineered mutation |
Asn 289 | Met 288 | conflict |
Ser 300 | Cys 299 | engineered mutation |
Ser 313 | Cys 312 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Pro 6 | - | expression tag |
Val 7 | - | expression tag |
Gly 164 | - | insertion |
Cys 238 | Leu 237 | engineered mutation |
Asn 289 | Met 288 | conflict |
Ser 300 | Cys 299 | engineered mutation |
Ser 313 | Cys 312 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Pro 6 | - | expression tag |
Val 7 | - | expression tag |
Gly 164 | - | insertion |
Cys 238 | Leu 237 | engineered mutation |
Asn 289 | Met 288 | conflict |
Ser 300 | Cys 299 | engineered mutation |
Ser 313 | Cys 312 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Gly 164 | - | insertion |
Cys 238 | Leu 237 | engineered mutation |
Asn 289 | Met 288 | conflict |
Ser 300 | Cys 299 | engineered mutation |
Ser 313 | Cys 312 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Gly 164 | - | insertion |
Cys 238 | Leu 237 | engineered mutation |
Asn 289 | Met 288 | conflict |
Ser 300 | Cys 299 | engineered mutation |
Ser 313 | Cys 312 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 244605.9 | |
Non-Polymers* | Number of molecules | 12 |
Total formula weight | 4634.7 | |
All* | Total formula weight | 249240.6 |