6HJX
X-ray structure of a pentameric ligand gated ion channel from Erwinia chrysanthemi (ELIC) 7'C pore mutant (L238C) in complex with nanobody 72
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004888 | molecular_function | transmembrane signaling receptor activity |
A | 0005216 | molecular_function | monoatomic ion channel activity |
A | 0005230 | molecular_function | extracellular ligand-gated monoatomic ion channel activity |
A | 0006811 | biological_process | monoatomic ion transport |
A | 0016020 | cellular_component | membrane |
A | 0034220 | biological_process | monoatomic ion transmembrane transport |
B | 0004888 | molecular_function | transmembrane signaling receptor activity |
B | 0005216 | molecular_function | monoatomic ion channel activity |
B | 0005230 | molecular_function | extracellular ligand-gated monoatomic ion channel activity |
B | 0006811 | biological_process | monoatomic ion transport |
B | 0016020 | cellular_component | membrane |
B | 0034220 | biological_process | monoatomic ion transmembrane transport |
C | 0004888 | molecular_function | transmembrane signaling receptor activity |
C | 0005216 | molecular_function | monoatomic ion channel activity |
C | 0005230 | molecular_function | extracellular ligand-gated monoatomic ion channel activity |
C | 0006811 | biological_process | monoatomic ion transport |
C | 0016020 | cellular_component | membrane |
C | 0034220 | biological_process | monoatomic ion transmembrane transport |
D | 0004888 | molecular_function | transmembrane signaling receptor activity |
D | 0005216 | molecular_function | monoatomic ion channel activity |
D | 0005230 | molecular_function | extracellular ligand-gated monoatomic ion channel activity |
D | 0006811 | biological_process | monoatomic ion transport |
D | 0016020 | cellular_component | membrane |
D | 0034220 | biological_process | monoatomic ion transmembrane transport |
E | 0004888 | molecular_function | transmembrane signaling receptor activity |
E | 0005216 | molecular_function | monoatomic ion channel activity |
E | 0005230 | molecular_function | extracellular ligand-gated monoatomic ion channel activity |
E | 0006811 | biological_process | monoatomic ion transport |
E | 0016020 | cellular_component | membrane |
E | 0034220 | biological_process | monoatomic ion transmembrane transport |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue P6G A 501 |
Chain | Residue |
A | ALA9 |
A | GLY45 |
A | LYS46 |
A | TRP72 |
A | GLN139 |
site_id | AC2 |
Number of Residues | 7 |
Details | binding site for residue PTY A 502 |
Chain | Residue |
B | ILE281 |
B | ALA288 |
E | LYS49 |
A | ALA217 |
A | TRP224 |
A | ARG301 |
A | LEU302 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue LMT A 503 |
Chain | Residue |
A | THR259 |
A | GLN264 |
A | HOH616 |
E | SER202 |
E | TRP206 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue LMT B 401 |
Chain | Residue |
A | TRP206 |
B | THR259 |
B | ILE267 |
B | HOH543 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue P6G B 402 |
Chain | Residue |
B | THR44 |
B | GLY45 |
B | LYS46 |
B | GLN138 |
B | GLN139 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue LMT C 401 |
Chain | Residue |
B | TRP206 |
C | THR259 |
C | GLN264 |
C | ALA268 |
C | LEU315 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue MES C 402 |
Chain | Residue |
C | ALA9 |
C | ARG10 |
C | TRP72 |
C | TYR135 |
C | GLN139 |
C | GLN185 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue LMT D 401 |
Chain | Residue |
C | SER202 |
C | TRP206 |
D | THR259 |
D | GLN264 |
D | LEU315 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue P6G D 402 |
Chain | Residue |
D | ALA9 |
D | ARG10 |
D | TRP72 |
D | GLN138 |
D | GLN139 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue LMT E 401 |
Chain | Residue |
D | TRP206 |
E | THR259 |
E | GLN264 |
E | PHE308 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue P6G E 402 |
Chain | Residue |
E | THR44 |
E | GLY45 |
E | TRP72 |
E | GLN139 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 60 |
Details | TRANSMEM: Helical => ECO:0000255 |
Chain | Residue | Details |
E | LEU205-LEU225 | |
E | THR234-PRO254 | |
E | MET265-HIS285 |
site_id | SWS_FT_FI2 |
Number of Residues | 22 |
Details | TOPO_DOM: Cytoplasmic => ECO:0000255 |
Chain | Residue | Details |
E | GLU226-GLN233 | |
E | ARG286-ARG301 |
site_id | SWS_FT_FI3 |
Number of Residues | 9 |
Details | TOPO_DOM: Periplasmic => ECO:0000255 |
Chain | Residue | Details |
E | ARG255-GLN264 |