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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6GSM

Structure of a partial yeast 48S preinitiation complex in open conformation.

This is a non-PDB format compatible entry.
Replaces:  3JAQ
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11Met-tRNAipolymer7624799.11Saccharomyces cerevisiae S288C
2218S ribosomal RNApolymer1798579239.61Kluyveromyces lactis NRRL Y-1140
3A40S ribosomal protein S0polymer20823140.41UniProt (Q6CN12)
Pfam (PF00318)
In PDB		Kluyveromyces lactis NRRL Y-1140
43mRNA (5'-R(P*AP*AP*U)-3')polymer3919.61Kluyveromyces lactis
5B40S ribosomal protein S1polymer23126404.71UniProt (Q6CWD0)
Pfam (PF01015)
In PDB		Kluyveromyces lactis NRRL Y-1140
6CKLLA0F09812ppolymer21723162.91UniProt (Q6CKL3)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Kluyveromyces lactis NRRL Y-1140
7DKLLA0D08305ppolymer22324830.91UniProt (Q6CRK7)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Kluyveromyces lactis NRRL Y-1140
8E40S ribosomal protein S4polymer26029486.31UniProt (Q6CWJ2)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB		Kluyveromyces lactis NRRL Y-1140
9FKLLA0D10659ppolymer20622912.41UniProt (Q6CRA3)
Pfam (PF00177)
In PDB		Kluyveromyces lactis NRRL Y-1140
10G40S ribosomal protein S6polymer22625811.01UniProt (Q6CM04)
Pfam (PF01092)
In PDB		Kluyveromyces lactis NRRL Y-1140
11H40S ribosomal protein S7polymer18421033.61UniProt (Q6CTD6)
Pfam (PF01251)
In PDB		Kluyveromyces lactis NRRL Y-1140
12I40S ribosomal protein S8polymer20022511.51UniProt (Q6CMG3)
Pfam (PF01201)
In PDB		Kluyveromyces lactis NRRL Y-1140
13JKLLA0E23673ppolymer18220882.31UniProt (Q6CM18)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Kluyveromyces lactis NRRL Y-1140
14KKLLA0B08173ppolymer9611423.11UniProt (Q6CVZ5)
Pfam (PF03501)
In PDB		Kluyveromyces lactis NRRL Y-1140
15LKLLA0A10483ppolymer15517712.71UniProt (Q6CX80)
Pfam (PF00366)
Pfam (PF16205)
In PDB		Kluyveromyces lactis NRRL Y-1140
16M40S ribosomal protein S12polymer11812710.51UniProt (Q6CLU4)
Pfam (PF01248)
In PDB		Kluyveromyces lactis NRRL Y-1140
17NKLLA0F18040ppolymer15016858.71UniProt (Q6CJK0)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Kluyveromyces lactis NRRL Y-1140
18O40S ribosomal protein S14polymer12713458.41UniProt (P27069)
Pfam (PF00411)
In PDB		Kluyveromyces lactis NRRL Y-1140RP59
19PKLLA0F07843ppolymer11913448.81UniProt (Q6CKV4)
Pfam (PF00203)
In PDB		Kluyveromyces lactis NRRL Y-1140
20Q40S ribosomal protein S16polymer14115656.31UniProt (Q875N2)
Pfam (PF00380)
In PDB		Kluyveromyces lactis NRRL Y-1140
21RKLLA0B01474ppolymer12514200.41UniProt (Q6CWU3)
Pfam (PF00833)
In PDB		Kluyveromyces lactis NRRL Y-1140
22SKLLA0B01562ppolymer14516953.41UniProt (Q6CWT9)
Pfam (PF00416)
In PDB		Kluyveromyces lactis NRRL Y-1140
23TKLLA0A07194ppolymer14315747.81UniProt (Q6CXM0)
Pfam (PF01090)
In PDB		Kluyveromyces lactis NRRL Y-1140
24UKLLA0F25542ppolymer10612032.11UniProt (Q6CIM1)
Pfam (PF00338)
In PDB		Kluyveromyces lactis NRRL Y-1140
25V40S ribosomal protein S21polymer879797.91UniProt (Q6CXT6)
Pfam (PF01249)
In PDB		Kluyveromyces lactis NRRL Y-1140
26W40S ribosomal protein S22polymer12914513.81UniProt (Q6CW21)
Pfam (PF00410)
In PDB		Kluyveromyces lactis NRRL Y-1140
27XKLLA0B11231ppolymer14415916.71UniProt (F2Z602)
Pfam (PF00164)
In PDB		Kluyveromyces lactis NRRL Y-1140
28Y40S ribosomal protein S24polymer13415063.41UniProt (Q6CU44)
Pfam (PF01282)
In PDB		Kluyveromyces lactis NRRL Y-1140
29ZKLLA0B06182ppolymer707939.21UniProt (Q6CW78)
Pfam (PF03297)
In PDB		Kluyveromyces lactis NRRL Y-1140
30a40S ribosomal protein S26polymer9811166.21UniProt (Q6CS01)
Pfam (PF01283)
In PDB		Kluyveromyces lactis NRRL Y-1140
31b40S ribosomal protein S27polymer818753.21UniProt (Q6CNL2)
Pfam (PF01667)
In PDB		Kluyveromyces lactis NRRL Y-1140
32c40S ribosomal protein S28polymer626972.21UniProt (P33285)
Pfam (PF01200)
In PDB		Kluyveromyces lactis NRRL Y-1140S33
33d40S ribosomal protein S29polymer536322.11UniProt (Q6CPG3)
Pfam (PF00253)
In PDB		Kluyveromyces lactis NRRL Y-1140
34e40S ribosomal protein S30polymer586608.81UniProt (Q6CUH5)
Pfam (PF04758)
In PDB		Kluyveromyces lactis NRRL Y-1140
35fUbiquitin-40S ribosomal protein S27apolymer697958.41UniProt (P69061)
Pfam (PF01599)
In PDB		Kluyveromyces lactis NRRL Y-1140
36gKLLA0E12277ppolymer32435612.71UniProt (Q6CNI7)
Pfam (PF00400)
In PDB		Kluyveromyces lactis NRRL Y-1140
37h60S ribosomal protein L41-Apolymer253354.21UniProt (P0CX86)
Pfam (PF05162)
In PDB		Kluyveromyces lactis NRRL Y-1140L47,Large ribosomal subunit protein eL41-A,YL41
38iEukaryotic translation initiation factor 1Apolymer9510953.51UniProt (P38912)
Pfam (PF01176)
In PDB		Saccharomyces cerevisiae S288CeIF-1A,Eukaryotic translation initiation factor 4C,eIF-4C
39jEukaryotic translation initiation factor 2 subunit alphapolymer26330222.01UniProt (P20459)
Pfam (PF00575)
Pfam (PF07541)
In PDB		Saccharomyces cerevisiae S288CeIF-2-alpha
40kEukaryotic translation initiation factor 2 subunit gammapolymer43047230.11UniProt (P32481)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF09173)
In PDB		Saccharomyces cerevisiae S288CeIF-2-gamma
41lEukaryotic translation initiation factor 2 subunit betapolymer14416458.11UniProt (P09064)
Pfam (PF01873)
In PDB		Saccharomyces cerevisiae S288CeIF-2-beta
42mEukaryotic translation initiation factor eIF-1polymer9610919.51UniProt (P32911)
Pfam (PF01253)
In PDB		Saccharomyces cerevisiae S288CProtein translation factor SUI1
43oEukaryotic translation initiation factor 3 subunit A,Eukaryotic translation initiation factor 3 subunit A,eIF3apolymer56762822.81UniProt (P38249)
In PDB		Saccharomyces cerevisiae S288CeIF3a,Eukaryotic translation initiation factor 3 110 kDa subunit homolog,eIF3 p110,Translation initiation factor eIF3,p110 subunit homolog
44pEukaryotic translation initiation factor 3 subunit Bpolymer65175014.01UniProt (P06103)
Pfam (PF00076)
Pfam (PF08662)
In PDB		Saccharomyces cerevisiae S288CeIF3b,Cell cycle regulation and translation initiation protein,Eukaryotic translation initiation factor 3 90 kDa subunit,eIF3 p90,Translation initiation factor eIF3 p90 subunit
45qEukaryotic translation initiation factor 3 subunit Cpolymer66576963.21UniProt (P32497)
Pfam (PF05470)
Pfam (PF01399)
In PDB		Saccharomyces cerevisiae S288CeIF3c,Eukaryotic translation initiation factor 3 93 kDa subunit,eIF3 p93,Nuclear transport protein NIP1,Translation initiation factor eIF3,p93 subunit
46sEukaryotic translation initiation factor 3 subunit Ipolymer34238229.81UniProt (P40217)
Pfam (PF00400)
In PDB		Saccharomyces cerevisiae S288CeIF3i,Eukaryotic translation initiation factor 3 39 kDa subunit,eIF3 p39
47rEukaryotic translation initiation factor 3 subunit Gpolymer495576.21UniProt (Q04067)
Pfam (PF12353)
In PDB		Saccharomyces cerevisiae S288CeIF3g,Eukaryotic translation initiation factor 3 RNA-binding subunit,eIF-3 RNA-binding subunit,Translation initiation factor eIF3 p33 subunit,eIF3 p33
481[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] (2~{S})-2-azanyl-4-methylsulfanyl-butanoatenon-polymer478.41Chemie (7NO)
492, k, C, O, QMAGNESIUM IONnon-polymer24.382Chemie (MG)
50b, f, l, OZINC IONnon-polymer65.44Chemie (ZN)
51kPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
Sequence modifications
o: 5 - 492 (UniProt: P38249)
o: 693 - 771 (PDB: 6GSM)
p: 77 - 737 (UniProt: P06103)
PDBExternal DatabaseDetails
-Ala 665deletion
-Ser 666deletion
-Ile 667deletion
-Ala 685deletion
-Gln 686deletion
-Phe 687deletion
-Asp 701deletion
-Leu 702deletion
-Ile 703deletion
-Leu 704deletion
q: 96 - 794 (UniProt: P32497)
PDBExternal DatabaseDetails
-Asp 137deletion
-Lys 187deletion
-Asn 188deletion
-Pro 220deletion
-Glu 221deletion
-Ser 222deletion
-Phe 223deletion
-Asp 224deletion
-Lys 225deletion
-Glu 226deletion
-Pro 227deletion
-Thr 228deletion
-Ala 229deletion
-Asp 230deletion
-Leu 231deletion
-Asp 232deletion
-Ile 233deletion
-Ser 234deletion
-Ala 235deletion
-Asn 236deletion
-Gly 237deletion
-Phe 238deletion
-Thr 239deletion
-Ile 240deletion
-Ser 241deletion
-Ser 242deletion
-Ser 243deletion
-Gln 244deletion
-Gly 245deletion
-Asn 246deletion
-Asp 247deletion
-Gln 248deletion
-Ala 249deletion
-Val 250deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains47
Total formula weight1529704.6
Non-Polymers*Number of molecules88
Total formula weight3254.3
All*Total formula weight1532958.9
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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