6GO7
TdT chimera (Loop1 of pol mu) - full DNA synapsis complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA nucleotidylexotransferase,DNA-directed DNA/RNA polymerase mu,DNA nucleotidylexotransferase | polymer | 401 | 45849.0 | 1 | UniProt (P09838) UniProt (Q9JIW4) Pfam (PF14716) Pfam (PF10391) Pfam (PF01909) Pfam (PF14791) In PDB | Mus musculus (Mouse) | Terminal addition enzyme,Terminal deoxynucleotidyltransferase,Terminal transferase,Pol Mu,Terminal transferase,Terminal addition enzyme,Terminal deoxynucleotidyltransferase,Terminal transferase |
2 | F, G | DNA (5'-D(*AP*AP*AP*AP*AP*C)-3') | polymer | 6 | 1810.3 | 2 | synthetic construct | ||
3 | E, H, I, J | DNA (5'-D(*TP*TP*TP*TP*TP*GP*C)-3') | polymer | 7 | 2094.4 | 4 | synthetic construct | ||
4 | A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
5 | A | 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE | non-polymer | 451.2 | 1 | Chemie (DCT) | |||
6 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
7 | water | water | 18.0 | 180 | Chemie (HOH) |
Sequence modifications
A: 132 - 377 (UniProt: P09838)
A: 378 - 407 (UniProt: Q9JIW4)
A: 408 - 511 (UniProt: P09838)
PDB | External Database | Details |
---|---|---|
Met 111 | - | initiating methionine |
Gly 112 | - | expression tag |
Ser 113 | - | expression tag |
Ser 114 | - | expression tag |
His 115 | - | expression tag |
His 116 | - | expression tag |
His 117 | - | expression tag |
His 118 | - | expression tag |
His 119 | - | expression tag |
His 120 | - | expression tag |
Ser 121 | - | expression tag |
Ser 122 | - | expression tag |
Gly 123 | - | expression tag |
Leu 124 | - | expression tag |
Val 125 | - | expression tag |
Pro 126 | - | expression tag |
Arg 127 | - | expression tag |
Gly 128 | - | expression tag |
Ser 129 | - | expression tag |
His 130 | - | expression tag |
Met 131 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Val 401 | Ala 386 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 7 |
Total formula weight | 57847.1 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 498.5 | |
All* | Total formula weight | 58345.5 |