6GDY
Crystal structure of 2OG oxygenase JMJD6 (aa 1-343) in complex with Fe(II) and 2OG
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 | polymer | 343 | 40243.5 | 2 | UniProt (Q6NYC1) Pfam (PF02373) | Homo sapiens (Human) | Histone arginine demethylase JMJD6,JmjC domain-containing protein 6,Jumonji domain-containing protein 6,Lysyl-hydroxylase JMJD6,Peptide-lysine 5-dioxygenase JMJD6,Phosphatidylserine receptor,Protein PTDSR |
| 2 | C, N (A, B) | FE (III) ION | non-polymer | 55.8 | 2 | Chemie (FE) | |||
| 3 | D, O (A, B) | 2-OXOGLUTARIC ACID | non-polymer | 146.1 | 2 | Chemie (AKG) | |||
| 4 | E (A) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 5 | F, G, H, I, J... (A, B) | PHOSPHATE ION | non-polymer | 95.0 | 10 | Chemie (PO4) | |||
| 6 | K, L (A) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 2 | Chemie (EPE) | |||
| 7 | M, U, V (A, B) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 8 | W, X (A, B) | water | water | 18.0 | 455 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 80487.1 | |
| Non-Polymers* | Number of molecules | 20 |
| Total formula weight | 2129.5 | |
| All* | Total formula weight | 82616.5 |
