Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6GDY

Crystal structure of 2OG oxygenase JMJD6 (aa 1-343) in complex with Fe(II) and 2OG

Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue FE A 401
ChainResidue
AHIS187
AASP189
AHIS273
AAKG402
AHOH682

site_idAC2
Number of Residues12
Detailsbinding site for residue AKG A 402
ChainResidue
AASP189
AASN197
ALYS204
AHIS273
AVAL275
AFE401
AHOH558
AHOH598
ATYR131
APHE133
ATHR184
AHIS187

site_idAC3
Number of Residues2
Detailsbinding site for residue NA A 403
ChainResidue
ATHR86
ALEU87

site_idAC4
Number of Residues4
Detailsbinding site for residue PO4 A 404
ChainResidue
ASER109
ASER136
AHOH531
AHOH650

site_idAC5
Number of Residues9
Detailsbinding site for residue PO4 A 405
ChainResidue
AALA75
AGLN76
AGLU77
ATRP79
ALYS151
APRO153
AHOH511
AHOH521
AHOH572

site_idAC6
Number of Residues4
Detailsbinding site for residue PO4 A 406
ChainResidue
AARG305
APRO306
ALYS307
ALEU308

site_idAC7
Number of Residues4
Detailsbinding site for residue PO4 A 407
ChainResidue
ALYS91
AARG95
AGLU119
BGLU88

site_idAC8
Number of Residues6
Detailsbinding site for residue PO4 A 408
ChainResidue
ALYS4
AARG8
ALYS113
ATYR116
AHOH501
AHOH586

site_idAC9
Number of Residues7
Detailsbinding site for residue EPE A 409
ChainResidue
ALYS84
AARG89
ALYS93
AHOH643
BARG95
BASN96
BLYS115

site_idAD1
Number of Residues7
Detailsbinding site for residue EPE A 410
ChainResidue
AARG95
AASN96
ALYS115
AHOH679
BLYS84
BARG89
BLYS93

site_idAD2
Number of Residues7
Detailsbinding site for residue GOL A 411
ChainResidue
ATYR67
ATHR211
AGLY269
AGLY270
AHOH522
BGLU61
BARG65

site_idAD3
Number of Residues5
Detailsbinding site for residue FE B 401
ChainResidue
BHIS187
BASP189
BHIS273
BAKG402
BHOH542

site_idAD4
Number of Residues12
Detailsbinding site for residue AKG B 402
ChainResidue
BTYR131
BPHE133
BTHR184
BHIS187
BASP189
BASN197
BLYS204
BHIS273
BFE401
BHOH507
BHOH518
BHOH613

site_idAD5
Number of Residues4
Detailsbinding site for residue PO4 B 403
ChainResidue
BSER55
BVAL56
BLYS154
BHOH501

site_idAD6
Number of Residues4
Detailsbinding site for residue PO4 B 404
ChainResidue
BSER109
BLYS111
BSER136
BHOH650

site_idAD7
Number of Residues4
Detailsbinding site for residue PO4 B 405
ChainResidue
BARG305
BPRO306
BLYS307
BLEU308

site_idAD8
Number of Residues5
Detailsbinding site for residue PO4 B 406
ChainResidue
BHOH528
BHOH558
BARG8
BLYS113
BTYR116

site_idAD9
Number of Residues5
Detailsbinding site for residue PO4 B 407
ChainResidue
ASER329
AVAL330
AGLN333
BARG65
BSER291

site_idAE1
Number of Residues7
Detailsbinding site for residue GOL B 408
ChainResidue
BALA75
BGLN76
BGLU77
BTRP79
BLYS151
BPRO153
BLYS154

site_idAE2
Number of Residues9
Detailsbinding site for residue GOL B 409
ChainResidue
BARG17
BTRP26
BSER128
BLEU130
BGLY183
BGLU231
BHOH516
BHOH566
BHOH699

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ATHR184
ALYS204
BTHR184
BLYS204

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:20679243
ChainResidueDetails
AHIS187
BTHR285
AASP189
AASN197
AHIS273
ATHR285
BHIS187
BASP189
BASN197
BHIS273

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER38
BSER38

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon