6GB7
Structure of H-2Db with scoop loop from tapasin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (A, C, E, G) | H-2 class I histocompatibility antigen, D-B alpha chain | polymer | 338 | 38449.1 | 4 | UniProt (P01899) Pfam (PF00129) Pfam (PF07654) Pfam (PF06623) | Mus musculus (Mouse) | H-2D(B) |
| 2 | B, D, H (B, D, H) | Beta-2-microglobulin | polymer | 100 | 11761.4 | 3 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 3 | F (F) | Beta-2-microglobulin | polymer | 99 | 11704.4 | 1 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 4 | I, J, K, L (I, J, K, L) | PHE-ALA-PRO-GLY-ASN-TYR-PRO | polymer | 7 | 764.8 | 4 | UniProt (by SIFTS) (O57286) | Sendai virus | |
| 5 | M, N (P, R) | GLY-GLY-LEU-SER | polymer | 10 | 890.9 | 2 | UniProt (by SIFTS) (Q9R233) | Mus musculus | |
| 6 | AA, O, W, Z (G, A, C, F) | SULFATE ION | non-polymer | 96.1 | 4 | Chemie (SO4) | |||
| 7 | BA, CA, P, Q, R... (G, A, B, C, D) | GLYCEROL | non-polymer | 92.1 | 11 | Chemie (GOL) | |||
| 8 | DA, EA, FA, GA, HA... (A, B, C, D, E...) | water | water | 18.0 | 774 | Chemie (HOH) |
Sequence modifications
B, D, H: 0 - 99 (UniProt: P01887)
F: 1 - 99 (UniProt: P01887)
| PDB | External Database | Details |
|---|---|---|
| Gly 0 | Ala 20 | cloning artifact |
| Asp 85 | Ala 105 | variant |
| PDB | External Database | Details |
|---|---|---|
| Asp 85 | Ala 105 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 14 |
| Total formula weight | 205626.2 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 1397.3 | |
| All* | Total formula weight | 207023.5 |
