6FDF
Crystal structure of S. pombe Dnmt2 methyltransferase
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | tRNA (cytosine(38)-C(5))-methyltransferase | polymer | 334 | 38300.7 | 4 | UniProt (P40999) Pfam (PF00145) | Schizosaccharomyces pombe (Fission yeast) | DNA (cytosine-5)-methyltransferase-like protein 2,Dnmt2,M.SpomI,SpIM.SpoI |
| 2 | E, J, N, Q (A, B, C, D) | S-ADENOSYL-L-HOMOCYSTEINE | non-polymer | 384.4 | 4 | Chemie (SAH) PubChem (16760024) PubChem (193) PubChem (13792) PubChem (177678424) PubChem (189149) PubChem (439155) PubChem (25210495) PubChem (21125603) PubChem (44361184) PubChem (25203782) PubChem (46936206) PubChem (50989525) PubChem (51380914) PubChem (52224398) PubChem (57544532) PubChem (52224400) PubChem (59046843) PubChem (59170628) PubChem (59576228) PubChem (66805708) PubChem (5284331) PubChem (70689219) PubChem (70702054) PubChem (70832431) PubChem (71170554) PubChem (13231890) PubChem (6419189) PubChem (118374891) PubChem (118560068) PubChem (126969526) PubChem (129105892) PubChem (164157219) PubChem (143518505) PubChem (154578335) PubChem (163054214) PubChem (163335525) | |||
| 3 | F, G, H, I, K... (A, B, C, D) | GLYCEROL | non-polymer | 92.1 | 11 | Chemie (GOL) PubChem (753) | |||
| 4 | T, U, V, W (A, B, C, D) | water | water | 18.0 | 832 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 2 - 330 (UniProt: P40999)
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Pro -2 | - | expression tag |
| Leu -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Ser 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 153202.6 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 2550.7 | |
| All* | Total formula weight | 155753.3 |
