6F1T
Cryo-EM structure of two dynein tail domains bound to dynactin and BICDR1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E... | ARP1 actin related protein 1 homolog A | polymer | 376 | 42670.7 | 8 | UniProt (F2Z5G5) Pfam (PF00022) In PDB | Sus scrofa (Pig) | |
2 | H | Actin, cytoplasmic 1 | polymer | 375 | 41782.7 | 1 | UniProt (Q6QAQ1) Pfam (PF00022) In PDB | Sus scrofa (Pig) | Beta-actin |
3 | J | Actin related protein 10 homolog | polymer | 390 | 43203.3 | 1 | UniProt (I3LHK5) Pfam (PF00022) In PDB | Sus scrofa (Pig) | |
4 | K | Capping protein (Actin filament) muscle Z-line, alpha 1 | polymer | 286 | 33059.8 | 1 | UniProt (A0PFK5) Pfam (PF01267) In PDB | Sus scrofa (Pig) | F-actin capping protein alpha 1 subunit,F-actin capping protein subunit alpha 1 |
5 | L | F-actin capping protein beta subunit | polymer | 272 | 30669.8 | 1 | UniProt (A9XFX6) Pfam (PF01115) UniProt (by SIFTS) (A0PFK7) In PDB | Sus scrofa (Pig) | F-actin-capping protein subunit beta,F-actin-capping protein subunit beta isoform 1 |
6 | M | Dynactin Subunit 2 | polymer | 589 | 50144.9 | 1 | Sus scrofa (Pig) | ||
7 | N | Dynactin Subunit 2 | polymer | 618 | 52613.0 | 1 | Sus scrofa (Pig) | ||
8 | O, P | Dynactin Subunit 3 | polymer | 65 | 5549.8 | 2 | Sus scrofa (Pig) | ||
9 | Q, R | Dynactin Subunit 2 | polymer | 87 | 7422.1 | 2 | Sus scrofa (Pig) | ||
10 | U | Dynactin 6 | polymer | 190 | 20703.9 | 1 | UniProt (D0G6S1) In PDB | Sus scrofa (Pig) | |
11 | V | Dynactin subunit 5 | polymer | 182 | 20150.5 | 1 | UniProt (A0A286ZK88) Pfam (PF21711) In PDB | Sus scrofa (Pig) | |
12 | X | BICD family-like cargo adapter 1,BICD family-like cargo adapter 1,BICD family-like cargo adapter 1,BICDR-1 | polymer | 389 | 42423.0 | 1 | UniProt (A0JNT9) In PDB | Mus musculus (Mouse) | Bicaudal D-related protein 1,BICDR-1,Coiled-coil domain-containing protein 64A,Bicaudal D-related protein 1,BICDR-1,Coiled-coil domain-containing protein 64A,Bicaudal D-related protein 1,BICDR-1,Coiled-coil domain-containing protein 64A |
13 | Y | Dynactin Subunit 4 | polymer | 263 | 22400.5 | 1 | Sus scrofa (Pig) | ||
14 | Z | Dynactin Subunit 1 | polymer | 52 | 4443.5 | 1 | Sus scrofa (Pig) | ||
15 | a | Dynactin subunit 2 | polymer | 66 | 7377.0 | 1 | UniProt (F1SKF9) UniProt (by SIFTS) (A0A5G2QD80) In PDB | Sus scrofa (Pig) | |
16 | b | Dynactin subunit 2 | polymer | 89 | 10000.9 | 1 | UniProt (F1SKF9) UniProt (by SIFTS) (A0A5G2QD80) In PDB | Sus scrofa (Pig) | |
17 | c | Dynactin subunit 2 | polymer | 50 | 5582.0 | 1 | UniProt (F1SKF9) UniProt (by SIFTS) (A0A5G2QD80) In PDB | Sus scrofa (Pig) | |
18 | d | Dynactin subunit 2 | polymer | 26 | 2880.1 | 1 | UniProt (F1SKF9) UniProt (by SIFTS) (A0A5G2QD80) In PDB | Sus scrofa (Pig) | |
19 | e, f, m, n | Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1,Dynein Heavy Chain,Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1,Dynein Heavy Chain,Cytoplasmic dynein 1 heavy chain 1,Cytoplasmic dynein 1 heavy chain 1 | polymer | 1053 | 119509.4 | 4 | UniProt (Q14204) Pfam (PF08385) In PDB | Homo sapiens (Human) | Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic,Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic,Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic,Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic,Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic,Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic,Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic,Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic,Cytoplasmic dynein heavy chain 1,Dynein heavy chain,cytosolic |
20 | g, h, o, p | Cytoplasmic dynein 1 intermediate chain 2 | polymer | 612 | 68442.1 | 4 | UniProt (Q13409) Pfam (PF11540) Pfam (PF00400) In PDB | Homo sapiens (Human) | Cytoplasmic dynein intermediate chain 2,Dynein intermediate chain 2,cytosolic,DH IC-2 |
21 | i, j, q, r | Cytoplasmic dynein 1 light intermediate chain 2 | polymer | 492 | 54173.2 | 4 | UniProt (O43237) Pfam (PF05783) In PDB | Homo sapiens (Human) | Dynein light intermediate chain 2,cytosolic,LIC-2,LIC53/55 |
22 | k, l, s, t | Dynein light chain roadblock-type 1 | polymer | 96 | 10934.6 | 4 | UniProt (Q9NP97) Pfam (PF03259) In PDB | Homo sapiens (Human) | Bithoraxoid-like protein,BLP,Dynein light chain 2A,cytoplasmic,Dynein-associated protein Km23,Roadblock domain-containing protein 1 |
23 | x | BICD family-like cargo adapter 1,BICD family-like cargo adapter 1,BICD family-like cargo adapter 1 | polymer | 392 | 42678.4 | 1 | UniProt (A0JNT9) In PDB | Mus musculus (Mouse) | Bicaudal D-related protein 1,BICDR-1,Coiled-coil domain-containing protein 64A,Bicaudal D-related protein 1,BICDR-1,Coiled-coil domain-containing protein 64A,Bicaudal D-related protein 1,BICDR-1,Coiled-coil domain-containing protein 64A |
24 | z | Dynactin Subunit 1 | polymer | 53 | 4528.6 | 1 | Sus scrofa (Pig) | ||
25 | I, J, A, B, C... | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 9 | Chemie (ADP) | |||
26 | H | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) |
Sequence modifications
X: 1 - 325 (UniProt: A0JNT9)
X: 326 - 389 (PDB: 6F1T)
a: 1 - 66 (UniProt: F1SKF9)
b: 1 - 89 (UniProt: F1SKF9)
e, f, m, n: 1 - 983 (UniProt: Q14204)
e, f, m, n: 984 - 1032 (PDB: 6F1T)
e, f, m, n: 1033 - 1053 (PDB: 6F1T)
g, h, o, p: 1 - 612 (UniProt: Q13409)
x: 1 - 325 (UniProt: A0JNT9)
x: 326 - 392 (PDB: 6F1T)
X: 326 - 389 (PDB: 6F1T)
a: 1 - 66 (UniProt: F1SKF9)
PDB | External Database | Details |
---|---|---|
Leu 37 | Gln 37 | conflict |
PDB | External Database | Details |
---|---|---|
Leu 37 | Gln 37 | conflict |
e, f, m, n: 984 - 1032 (PDB: 6F1T)
e, f, m, n: 1033 - 1053 (PDB: 6F1T)
g, h, o, p: 1 - 612 (UniProt: Q13409)
PDB | External Database | Details |
---|---|---|
Ser 484 | Thr 484 | conflict |
Gly 499 | Asp 499 | conflict |
x: 326 - 392 (PDB: 6F1T)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 45 |
Total formula weight | 1814188.2 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 4352.0 | |
All* | Total formula weight | 1818540.2 |