6ERI
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AA) | 23S ribosomal RNA | polymer | 2810 | 911344.3 | 1 | GenBank (7636084) | Spinacia oleracea | |
| 2 | B (AB) | 4.5S ribosomal RNA | polymer | 106 | 34334.5 | 1 | GenBank (12299) | Spinacia oleracea | |
| 3 | C (AC) | 50S ribosomal protein L2, chloroplastic | polymer | 246 | 26990.3 | 1 | UniProt (P06509) Pfam (PF00181) Pfam (PF03947) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein uL2c,Ribosomal protein CS-L4 |
| 4 | D (AD) | 50S ribosomal protein L3, chloroplastic | polymer | 221 | 24117.3 | 1 | UniProt (P82191) Pfam (PF00297) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein uL3c |
| 5 | E (AE) | 50S ribosomal protein L4, chloroplastic | polymer | 212 | 23802.5 | 1 | UniProt (O49937) Pfam (PF00573) | Spinacia oleracea (Spinach) | R-protein L4,Chloroplastic large ribosomal subunit protein uL4c |
| 6 | F (AF) | 50S ribosomal protein L5, chloroplastic | polymer | 207 | 23015.8 | 1 | UniProt (P82192) Pfam (PF00281) Pfam (PF00673) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein uL5c |
| 7 | G (AG) | 50S ribosomal protein L6, chloroplastic | polymer | 172 | 19132.2 | 1 | UniProt (P82193) Pfam (PF00347) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein uL6c |
| 8 | H (AH) | 50S ribosomal protein L9, chloroplastic | polymer | 46 | 5212.4 | 1 | UniProt (P82180) Pfam (PF01281) | Spinacia oleracea (Spinach) | CL9,Chloroplastic large ribosomal subunit protein bL9c |
| 9 | I (AJ) | 50S ribosomal protein L13, chloroplastic | polymer | 200 | 22991.6 | 1 | UniProt (P12629) Pfam (PF00572) | Spinacia oleracea (Spinach) | CL13,Chloroplastic large ribosomal subunit protein uL13c |
| 10 | J (AK) | 50S ribosomal protein L14, chloroplastic | polymer | 121 | 13484.7 | 1 | UniProt (P09596) Pfam (PF00238) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein uL14c,Ribosomal protein CS-L29 |
| 11 | K (AL) | 50S ribosomal protein L15, chloroplastic | polymer | 184 | 20063.5 | 1 | UniProt (P22798) Pfam (PF00828) | Spinacia oleracea (Spinach) | CL15,Chloroplastic large ribosomal subunit protein uL15c |
| 12 | L (AM) | 50S ribosomal protein L16, chloroplastic | polymer | 134 | 15271.0 | 1 | UniProt (P17353) Pfam (PF00252) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein uL16c,Ribosomal protein CS-L24 |
| 13 | M (AN) | 50S ribosomal protein L17, chloroplastic | polymer | 116 | 13466.9 | 1 | UniProt (P82194) Pfam (PF01196) | Spinacia oleracea (Spinach) | CL17,Chloroplastic large ribosomal subunit protein bL17c |
| 14 | N (AO) | 50S ribosomal protein L18, chloroplastic | polymer | 121 | 13601.7 | 1 | UniProt (P82195) Pfam (PF00861) | Spinacia oleracea (Spinach) | CL18,Chloroplastic large ribosomal subunit protein uL18c |
| 15 | O (AP) | 50S ribosomal protein L19, chloroplastic | polymer | 118 | 13544.2 | 1 | UniProt (P82413) Pfam (PF01245) | Spinacia oleracea (Spinach) | CL19,Chloroplastic large ribosomal subunit protein bL19c |
| 16 | P (AQ) | 50S ribosomal protein L20, chloroplastic | polymer | 115 | 14098.7 | 1 | UniProt (P28803) Pfam (PF00453) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein bL20c |
| 17 | Q (AR) | 50S ribosomal protein L21, chloroplastic | polymer | 165 | 18752.5 | 1 | UniProt (P24613) Pfam (PF00829) | Spinacia oleracea (Spinach) | CL21,CS-L7,Chloroplastic large ribosomal subunit protein bL21c |
| 18 | R (AS) | 50S ribosomal protein L22, chloroplastic | polymer | 171 | 19826.5 | 1 | UniProt (P09594) Pfam (PF00237) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein uL22c,Ribosomal protein CS-L13 |
| 19 | S (AT) | 50S ribosomal protein L23, chloroplastic | polymer | 92 | 10576.5 | 1 | UniProt (Q9LWB5) Pfam (PF00276) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein uL23c,PRPL23 |
| 20 | T (AU) | 50S ribosomal protein L24, chloroplastic | polymer | 127 | 14487.9 | 1 | UniProt (P27683) Pfam (PF00467) Pfam (PF17136) | Spinacia oleracea (Spinach) | CL24,Chloroplastic large ribosomal subunit protein uL24c |
| 21 | U (AW) | 50S ribosomal protein L27, chloroplastic | polymer | 114 | 12971.0 | 1 | UniProt (P82190) Pfam (PF01016) | Spinacia oleracea (Spinach) | CL27,Chloroplastic large ribosomal subunit protein bL27c |
| 22 | V (AX) | 50S ribosomal protein L28, chloroplastic | polymer | 76 | 8887.6 | 1 | UniProt (P82245) Pfam (PF00830) | Spinacia oleracea (Spinach) | CL28,Chloroplastic large ribosomal subunit protein bL28c |
| 23 | W (AY) | 50S ribosomal protein L29, chloroplastic | polymer | 99 | 11900.1 | 1 | UniProt (P82248) Pfam (PF00831) | Spinacia oleracea (Spinach) | CL29,Chloroplastic large ribosomal subunit protein uL29c |
| 24 | X (AZ) | 50S ribosomal protein L31, chloroplastic | polymer | 66 | 7622.5 | 1 | UniProt (P82249) Pfam (PF01197) | Spinacia oleracea (Spinach) | CL31,Chloroplastic large ribosomal subunit protein bL31c |
| 25 | Y (Aa) | 50S ribosomal protein L32, chloroplastic | polymer | 48 | 5604.8 | 1 | UniProt (P28804) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein bL32c |
| 26 | Z (Ab) | 50S ribosomal protein L33, chloroplastic | polymer | 60 | 7021.3 | 1 | UniProt (P28805) Pfam (PF00471) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein bL33c |
| 27 | AA (Ac) | 50S ribosomal protein L34, chloroplastic | polymer | 61 | 6789.1 | 1 | UniProt (P82244) Pfam (PF00468) | Spinacia oleracea (Spinach) | CL34,Chloroplastic large ribosomal subunit protein bL34c |
| 28 | BA (Ad) | 50S ribosomal protein L35, chloroplastic | polymer | 72 | 8388.1 | 1 | UniProt (P23326) Pfam (PF01632) | Spinacia oleracea (Spinach) | CL35,Chloroplastic large ribosomal subunit protein bL35c |
| 29 | CA (Ae) | 50S ribosomal protein L36, chloroplastic | polymer | 37 | 4414.5 | 1 | UniProt (P12230) Pfam (PF00444) | Spinacia oleracea (Spinach) | Chloroplastic large ribosomal subunit protein bL36c |
| 30 | DA (Af) | 50S ribosomal protein 6, chloroplastic | polymer | 47 | 5316.2 | 1 | UniProt (P82411) Pfam (PF17257) | Spinacia oleracea (Spinach) | CL25,Chloroplastic large ribosomal subunit protein cL38,Plastid-specific 50S ribosomal protein 6,PSRP-6 |
| 31 | EA (Aw) | 50S ribosomal protein 5 alpha, chloroplastic | polymer | 49 | 6093.8 | 1 | UniProt (P27684) | Spinacia oleracea (Spinach) | 50S ribosomal protein L40,CL40,Chloroplastic large ribosomal subunit protein cL37,Plastid-specific 50S ribosomal protein 5 alpha,PSRP-5 |
| 32 | FA (Ax) | 5S ribosomal RNA | polymer | 118 | 38072.6 | 1 | Spinacia oleracea | ||
| 33 | GA (Az) | Ribosome-recycling factor, chloroplastic | polymer | 191 | 21643.7 | 1 | UniProt (P82231) Pfam (PF01765) | Spinacia oleracea (Spinach) | RRF,CpFrr,RRFHCP,Ribosome-releasing factor,chloroplastic |
| 34 | HA (BA) | 16S ribosomal RNA | polymer | 1481 | 480386.8 | 1 | GenBank (7636084) | Spinacia oleracea | |
| 35 | IA (BB) | 30S ribosomal protein S2, chloroplastic | polymer | 215 | 24166.2 | 1 | UniProt (P08242) Pfam (PF00318) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS2c |
| 36 | JA (BC) | 30S ribosomal protein S3, chloroplastic | polymer | 217 | 24834.0 | 1 | UniProt (P09595) Pfam (PF00189) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS3c |
| 37 | KA (BD) | 30S ribosomal protein S4, chloroplastic | polymer | 200 | 23323.3 | 1 | UniProt (P13788) Pfam (PF00163) Pfam (PF01479) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS4c |
| 38 | LA (BE) | 30S ribosomal protein S5, chloroplastic | polymer | 158 | 16990.8 | 1 | UniProt (Q9ST69) Pfam (PF00333) Pfam (PF03719) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS5c |
| 39 | MA (BF) | 30S ribosomal protein S6 alpha, chloroplastic | polymer | 113 | 12974.9 | 1 | UniProt (P82403) Pfam (PF01250) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein bS6c |
| 40 | NA (BG) | 30S ribosomal protein S7, chloroplastic | polymer | 151 | 16804.6 | 1 | UniProt (P82129) Pfam (PF00177) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS7c |
| 41 | OA (BH) | 30S ribosomal protein S8, chloroplastic | polymer | 134 | 15527.3 | 1 | UniProt (P09597) Pfam (PF00410) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS8c |
| 42 | PA (BI) | 30S ribosomal protein S9, chloroplastic | polymer | 141 | 15479.0 | 1 | UniProt (P82278) Pfam (PF00380) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS9c |
| 43 | QA (BJ) | 30S ribosomal protein S10 alpha, chloroplastic | polymer | 98 | 11355.5 | 1 | UniProt (P82162) Pfam (PF00338) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS10c |
| 44 | RA (BK) | 30S ribosomal protein S11, chloroplastic | polymer | 110 | 11844.8 | 1 | UniProt (P06506) Pfam (PF00411) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS11c |
| 45 | SA (BL) | 30S ribosomal protein S12, chloroplastic | polymer | 122 | 13663.1 | 1 | UniProt (P62128) Pfam (PF00164) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS12c |
| 46 | TA (BM) | 30S ribosomal protein S13, chloroplastic | polymer | 111 | 13077.2 | 1 | UniProt (P82163) Pfam (PF00416) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS13c |
| 47 | UA (BN) | 30S ribosomal protein S14, chloroplastic | polymer | 99 | 11728.7 | 1 | UniProt (P06507) Pfam (PF00253) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS14c |
| 48 | VA (BO) | 30S ribosomal protein S15, chloroplastic | polymer | 72 | 8623.3 | 1 | UniProt (Q9M3I4) Pfam (PF00312) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS15c |
| 49 | WA (BP) | 30S ribosomal protein S16, chloroplastic | polymer | 81 | 9607.3 | 1 | UniProt (P28807) Pfam (PF00886) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein bS16c |
| 50 | XA (BQ) | 30S ribosomal protein S17, chloroplastic | polymer | 84 | 9686.3 | 1 | UniProt (P82137) Pfam (PF00366) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein uS17c |
| 51 | YA (BR) | 30S ribosomal protein S18, chloroplastic | polymer | 53 | 6281.5 | 1 | UniProt (Q9M3K7) Pfam (PF01084) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein bS18c |
| 52 | ZA (BS) | 30S ribosomal protein S19, chloroplastic | polymer | 81 | 9282.0 | 1 | UniProt (P06508) Pfam (PF00203) | Spinacia oleracea (Spinach) | CS-S23,Chloroplastic small ribosomal subunit protein uS19c |
| 53 | AB (BT) | 30S ribosomal protein S20, chloroplastic | polymer | 102 | 11668.6 | 1 | UniProt (P82130) Pfam (PF01649) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein bS20c |
| 54 | BB (BU) | 30S ribosomal protein S21, chloroplastic | polymer | 59 | 7353.3 | 1 | UniProt (P82024) Pfam (PF01165) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein bS21c |
| 55 | CB (BV) | Ribosome-binding factor PSRP1, chloroplastic | polymer | 106 | 11938.7 | 1 | UniProt (P19954) Pfam (PF02482) | Spinacia oleracea (Spinach) | 30S ribosomal protein 1,CS-S5,CS5,Plastid-specific 30S ribosomal protein 1,PSrp-1,Ribosomal protein 1,S22,Translation factor pY |
| 56 | DB (BW) | 30S ribosomal protein S31, chloroplastic | polymer | 37 | 4104.8 | 1 | UniProt (P47910) Pfam (PF17067) | Spinacia oleracea (Spinach) | Chloroplastic small ribosomal subunit protein bTHXc,Plastid-specific 30S ribosomal protein 4,PSRP-4 |
| 57 | EB (BY) | bS1c | polymer | 170 | 14485.8 | 1 | Spinacia oleracea | ||
| 58 | AC, AD, AE, AF, AG... (AA, AB, BA, Af, Aw...) | MAGNESIUM ION | non-polymer | 24.3 | 343 | Chemie (MG) | |||
| 59 | BL, CL (Ab, Ae) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
AE: 51 - 262 (UniProt: O49937)
BN: 2 - 100 (UniProt: P06507)
| PDB | External Database | Details |
|---|---|---|
| Ser 77 | Pro 77 | conflict |
| Thr 79 | Lys 79 | conflict |
| Arg 130 | Gly 130 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Tyr 73 | Ile 73 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 57 |
| Total formula weight | 2188027.8 | |
| Non-Polymers* | Number of molecules | 345 |
| Total formula weight | 8467.4 | |
| All* | Total formula weight | 2196495.2 |
