[English] 日本語
Yorodumi
- EMDB-3941: Structure of the chloroplast ribosome with chl-RRF and hibernatio... -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: EMDB / ID: EMD-3941
TitleStructure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
Map data
Sample
  • Complex: Chloroplast ribosome in complex with RRF
    • RNA: x 4 types
    • Protein or peptide: x 53 types
  • Ligand: x 2 types
Function / homology
Function and homology information


plastid small ribosomal subunit / plastid translation / negative regulation of translational elongation / mitochondrial large ribosomal subunit / mitochondrial small ribosomal subunit / mitochondrial translation / chloroplast stroma / plastid / ribosomal small subunit binding / chloroplast ...plastid small ribosomal subunit / plastid translation / negative regulation of translational elongation / mitochondrial large ribosomal subunit / mitochondrial small ribosomal subunit / mitochondrial translation / chloroplast stroma / plastid / ribosomal small subunit binding / chloroplast / DNA-templated transcription termination / ribosomal small subunit biogenesis / small ribosomal subunit rRNA binding / large ribosomal subunit / ribosomal small subunit assembly / small ribosomal subunit / 5S rRNA binding / large ribosomal subunit rRNA binding / transferase activity / cytosolic small ribosomal subunit / ribosomal large subunit assembly / cytoplasmic translation / cytosolic large ribosomal subunit / negative regulation of translation / rRNA binding / ribosome / structural constituent of ribosome / ribonucleoprotein complex / translation / response to antibiotic / mRNA binding / mitochondrion / RNA binding
Similarity search - Function
30S ribosomal protein S31, plant / Ribosomal protein S31e / Ribosomal protein L6, chloroplast / 50S ribosomal protein 5, chloroplastic / Family of unknown function (DUF5323) / Ribosomal protein L32p, plant/cyanobacteria type / Ribosome hibernation promoting factor, long/plastid / Ribosome recycling factor / Ribosome recycling factor domain / RRF superfamily ...30S ribosomal protein S31, plant / Ribosomal protein S31e / Ribosomal protein L6, chloroplast / 50S ribosomal protein 5, chloroplastic / Family of unknown function (DUF5323) / Ribosomal protein L32p, plant/cyanobacteria type / Ribosome hibernation promoting factor, long/plastid / Ribosome recycling factor / Ribosome recycling factor domain / RRF superfamily / Ribosome recycling factor / Sigma 54 modulation/S30EA ribosomal protein, C-terminal / Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily / Sigma 54 modulation/S30EA ribosomal protein C terminus / : / Ribosome hibernation promoting factor/RaiA / Ribosome hibernation promotion factor-like / Sigma 54 modulation protein / S30EA ribosomal protein / 30S ribosomal protein / Ribosomal protein S14, bacterial/plastid / Ribosomal protein S21 superfamily / Ribosomal protein S21 / Ribosomal protein S16, conserved site / Ribosomal protein S16 signature. / Ribosomal protein S21 / Ribosomal protein L31 / Ribosomal protein L31 superfamily / Ribosomal protein L31 / Ribosomal protein L21, conserved site / Ribosomal protein L21 signature. / Ribosomal protein L16 signature 1. / Ribosomal protein L6, conserved site / Ribosomal protein L6 signature 1. / Ribosomal protein L16, conserved site / Ribosomal protein L16 signature 2. / Ribosomal protein L9 signature. / Ribosomal protein L9, bacteria/chloroplast / Ribosomal protein L9, C-terminal / Ribosomal protein L9, C-terminal domain / Ribosomal protein L9, C-terminal domain superfamily / Ribosomal protein L36 signature. / Ribosomal protein L28/L24 superfamily / Ribosomal protein L9, N-terminal domain superfamily / Ribosomal protein L9 / Ribosomal protein L9, N-terminal / Ribosomal protein L9, N-terminal domain / : / : / Ribosomal protein L28 / Ribosomal protein L35, conserved site / Ribosomal protein L35 signature. / Ribosomal protein L33, conserved site / Ribosomal protein L33 signature. / Ribosomal protein L35, non-mitochondrial / Ribosomal protein L5, bacterial-type / Ribosomal protein L18, bacterial-type / Ribosomal protein L6, bacterial-type / Ribosomal protein L9/RNase H1, N-terminal / Ribosomal protein S3, bacterial-type / Ribosomal protein S19, bacterial-type / Ribosomal protein L36 / Ribosomal protein L36 superfamily / Ribosomal protein L36 / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein S11, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein L20 signature. / Ribosomal protein S9, bacterial/plastid / Ribosomal protein L27, conserved site / Ribosomal protein L27 signature. / Ribosomal protein S4, bacterial-type / 30S ribosomal protein S17 / Ribosomal protein S5, bacterial-type / Ribosomal protein L14P, bacterial-type / Ribosomal protein S6, plastid/chloroplast / Ribosomal protein L22, bacterial/chloroplast-type / Ribosomal protein L2, bacterial/organellar-type / Ribosomal protein S2, bacteria/mitochondria/plastid / Ribosomal protein L35 / Ribosomal protein L35 superfamily / Ribosomal protein L35 / Ribosomal L28 family / Ribosomal protein L33 / Ribosomal protein L33 / Ribosomal protein L28/L24 / Ribosomal protein L18 / Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast / Ribosomal protein L33 superfamily / Ribosomal protein S18, conserved site / Ribosomal protein S18 signature. / Ribosomal protein L16 / Ribosomal protein S16 / Ribosomal protein S16 domain superfamily / Ribosomal protein S16 / : / L28p-like / Ribosomal protein L20 / Ribosomal protein S15, bacterial-type
Similarity search - Domain/homology
Large ribosomal subunit protein uL4c / Small ribosomal subunit protein uS11c / Small ribosomal subunit protein uS14c / Small ribosomal subunit protein uS19c / Large ribosomal subunit protein uL2cz/uL2cy / Small ribosomal subunit protein uS2c / Large ribosomal subunit protein uL22c / Small ribosomal subunit protein uS3c / Large ribosomal subunit protein uL14c / Small ribosomal subunit protein uS8c ...Large ribosomal subunit protein uL4c / Small ribosomal subunit protein uS11c / Small ribosomal subunit protein uS14c / Small ribosomal subunit protein uS19c / Large ribosomal subunit protein uL2cz/uL2cy / Small ribosomal subunit protein uS2c / Large ribosomal subunit protein uL22c / Small ribosomal subunit protein uS3c / Large ribosomal subunit protein uL14c / Small ribosomal subunit protein uS8c / Large ribosomal subunit protein bL36c / Large ribosomal subunit protein uL13c / Small ribosomal subunit protein uS4c / Large ribosomal subunit protein uL16c / Ribosome-binding factor PSRP1, chloroplastic / Large ribosomal subunit protein uL15c / Large ribosomal subunit protein bL35c / Large ribosomal subunit protein bL21c / Large ribosomal subunit protein uL24c / Large ribosomal subunit protein cL37 alpha / Large ribosomal subunit protein bL20c / Large ribosomal subunit protein bL32c / Large ribosomal subunit protein bL33c / Small ribosomal subunit protein bS16c / Small ribosomal subunit protein bTHXc / Small ribosomal subunit protein uS12cz/uS12cy / Small ribosomal subunit protein bS21c / Small ribosomal subunit protein uS7cz/uS7cy / Small ribosomal subunit protein bS20c / Small ribosomal subunit protein uS17c / Small ribosomal subunit protein uS10c / Small ribosomal subunit protein uS13c / Large ribosomal subunit protein bL9c / Large ribosomal subunit protein bL27c / Large ribosomal subunit protein uL3c / Large ribosomal subunit protein uL5c / Large ribosomal subunit protein uL6c / Large ribosomal subunit protein bL17c / Large ribosomal subunit protein uL18c / Ribosome-recycling factor, chloroplastic / Large ribosomal subunit protein bL34c / Large ribosomal subunit protein bL28c / Large ribosomal subunit protein uL29c / Large ribosomal subunit protein bL31c / Small ribosomal subunit protein uS9c / Small ribosomal subunit protein bS6c alpha / Large ribosomal subunit protein cL38 / Large ribosomal subunit protein bL19c / Large ribosomal subunit protein uL23c / Small ribosomal subunit protein uS15c / Small ribosomal subunit protein bS18c / Small ribosomal subunit protein uS5c
Similarity search - Component
Biological speciesSpinacia oleracea (spinach) / Spinach (spinach)
Methodsingle particle reconstruction / cryo EM / Resolution: 3.0 Å
AuthorsPerez Borema A / Aibara S / Paul B / Tobiasson V / Kimanius D / Forsberg BO / Wallden K / Lindahl E / Amunts A
Funding support Sweden, 4 items
OrganizationGrant numberCountry
Swedish Foundation for Strategic ResearchFuture Leaders Grant FFL15:0325 Sweden
Swedish Research CouncilNT-2016-04107 Sweden
Ragnar Soderberg FoundationM44/16 Sweden
Swedish Research CouncilNT-2013-5901 Sweden
CitationJournal: Nat Plants / Year: 2018
Title: Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor.
Authors: Annemarie Perez Boerema / Shintaro Aibara / Bijoya Paul / Victor Tobiasson / Dari Kimanius / Björn O Forsberg / Karin Wallden / Erik Lindahl / A Amunts /
Abstract: Oxygenic photosynthesis produces oxygen and builds a variety of organic compounds, changing the chemistry of the air, the sea and fuelling the food chain on our planet. The photochemical reactions ...Oxygenic photosynthesis produces oxygen and builds a variety of organic compounds, changing the chemistry of the air, the sea and fuelling the food chain on our planet. The photochemical reactions underpinning this process in plants take place in the chloroplast. Chloroplasts evolved ~1.2 billion years ago from an engulfed primordial diazotrophic cyanobacterium, and chlororibosomes are responsible for synthesis of the core proteins driving photochemical reactions. Chlororibosomal activity is spatiotemporally coupled to the synthesis and incorporation of functionally essential co-factors, implying the presence of chloroplast-specific regulatory mechanisms and structural adaptation of the chlororibosome. Despite recent structural information, some of these aspects remained elusive. To provide new insights into the structural specialities and evolution, we report a comprehensive analysis of the 2.9-3.1 Å resolution electron cryo-microscopy structure of the spinach chlororibosome in complex with its recycling factor and hibernation-promoting factor. The model reveals a prominent channel extending from the exit tunnel to the chlororibosome exterior, structural re-arrangements that lead to increased surface area for translocon binding, and experimental evidence for parallel and convergent evolution of chloro- and mitoribosomes.
History
DepositionOct 18, 2017-
Header (metadata) releaseApr 18, 2018-
Map releaseApr 18, 2018-
UpdateNov 25, 2020-
Current statusNov 25, 2020Processing site: PDBe / Status: Released

-
Structure visualization

Movie
  • Surface view with section colored by density value
  • Surface level: 0.04
  • Imaged by UCSF Chimera
  • Download
  • Surface view colored by height
  • Surface level: 0.04
  • Imaged by UCSF Chimera
  • Download
  • Surface view with fitted model
  • Atomic models: PDB-6eri
  • Surface level: 0.04
  • Imaged by UCSF Chimera
  • Download
Movie viewer
Structure viewerEM map:
SurfViewMolmilJmol/JSmol
Supplemental images

emd_3941.png

Downloads & links

-
Map

FileDownload / File: emd_3941.map.gz / Format: CCP4 / Size: 282.6 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Projections & slices

Image control

Size
Brightness
Contrast
Others
AxesZ (Sec.)Y (Row.)X (Col.)
1.06 Å/pix.
x 420 pix.
= 445.2 Å		1.06 Å/pix.
x 420 pix.
= 445.2 Å		1.06 Å/pix.
x 420 pix.
= 445.2 Å

Surface

Projections

Slices (1/3)

Slices (1/2)

Slices (2/3)

Images are generated by Spider.

Voxel sizeX=Y=Z: 1.06 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy EMDB: 0.03 / Movie #1: 0.04
Minimum - Maximum-0.27180225 - 0.44942614
Average (Standard dev.)0.00084650127 (±0.011860409)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions420420420
Spacing420420420
CellA=B=C: 445.19998 Å
α=β=γ: 90.0 °

CCP4 map header:

modeImage stored as Reals
Å/pix. X/Y/Z1.061.061.06
M x/y/z420420420
origin x/y/z0.0000.0000.000
length x/y/z445.200445.200445.200
α/β/γ90.00090.00090.000
start NX/NY/NZ-128-128-128
NX/NY/NZ256256256
MAP C/R/S123
start NC/NR/NS000
NC/NR/NS420420420
D min/max/mean-0.2720.4490.001

-
Supplemental data

-
Mask #1

Fileemd_3941_msk_1.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Additional map: #1

Fileemd_3941_additional.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Half map: #1

Fileemd_3941_half_map_1.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Supplemental map: emd 3941 half map 2.map

Fileemd_3941_half_map_2.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

-
Sample components

+
Entire : Chloroplast ribosome in complex with RRF

EntireName: Chloroplast ribosome in complex with RRF
Components
  • Complex: Chloroplast ribosome in complex with RRF
    • RNA: 23S ribosomal RNA
    • RNA: 4.5S ribosomal RNA
    • Protein or peptide: 50S ribosomal protein L2, chloroplastic
    • Protein or peptide: 50S ribosomal protein L3, chloroplastic
    • Protein or peptide: 50S ribosomal protein L4, chloroplastic
    • Protein or peptide: 50S ribosomal protein L5, chloroplastic
    • Protein or peptide: 50S ribosomal protein L6, chloroplastic
    • Protein or peptide: 50S ribosomal protein L9, chloroplastic
    • Protein or peptide: 50S ribosomal protein L13, chloroplastic
    • Protein or peptide: 50S ribosomal protein L14, chloroplastic
    • Protein or peptide: 50S ribosomal protein L15, chloroplastic
    • Protein or peptide: 50S ribosomal protein L16, chloroplastic
    • Protein or peptide: 50S ribosomal protein L17, chloroplastic
    • Protein or peptide: 50S ribosomal protein L18, chloroplastic
    • Protein or peptide: 50S ribosomal protein L19, chloroplastic
    • Protein or peptide: 50S ribosomal protein L20, chloroplastic
    • Protein or peptide: 50S ribosomal protein L21, chloroplastic
    • Protein or peptide: 50S ribosomal protein L22, chloroplastic
    • Protein or peptide: 50S ribosomal protein L23, chloroplastic
    • Protein or peptide: 50S ribosomal protein L24, chloroplastic
    • Protein or peptide: 50S ribosomal protein L27, chloroplastic
    • Protein or peptide: 50S ribosomal protein L28, chloroplastic
    • Protein or peptide: 50S ribosomal protein L29, chloroplastic
    • Protein or peptide: 50S ribosomal protein L31, chloroplastic
    • Protein or peptide: 50S ribosomal protein L32, chloroplastic
    • Protein or peptide: 50S ribosomal protein L33, chloroplastic
    • Protein or peptide: 50S ribosomal protein L34, chloroplastic
    • Protein or peptide: 50S ribosomal protein L35, chloroplastic
    • Protein or peptide: 50S ribosomal protein L36, chloroplastic
    • Protein or peptide: 50S ribosomal protein 6, chloroplastic
    • Protein or peptide: 50S ribosomal protein 5 alpha, chloroplastic
    • RNA: 5S ribosomal RNA
    • Protein or peptide: Ribosome-recycling factor, chloroplastic
    • RNA: 16S ribosomal RNA
    • Protein or peptide: 30S ribosomal protein S2, chloroplastic
    • Protein or peptide: 30S ribosomal protein S3, chloroplastic
    • Protein or peptide: 30S ribosomal protein S4, chloroplastic
    • Protein or peptide: 30S ribosomal protein S5, chloroplastic
    • Protein or peptide: 30S ribosomal protein S6 alpha, chloroplastic
    • Protein or peptide: 30S ribosomal protein S7, chloroplastic
    • Protein or peptide: 30S ribosomal protein S8, chloroplastic
    • Protein or peptide: 30S ribosomal protein S9, chloroplastic
    • Protein or peptide: 30S ribosomal protein S10 alpha, chloroplastic
    • Protein or peptide: 30S ribosomal protein S11, chloroplastic
    • Protein or peptide: 30S ribosomal protein S12, chloroplastic
    • Protein or peptide: 30S ribosomal protein S13, chloroplastic
    • Protein or peptide: 30S ribosomal protein S14, chloroplastic
    • Protein or peptide: 30S ribosomal protein S15, chloroplastic
    • Protein or peptide: 30S ribosomal protein S16, chloroplastic
    • Protein or peptide: 30S ribosomal protein S17, chloroplastic
    • Protein or peptide: 30S ribosomal protein S18, chloroplastic
    • Protein or peptide: 30S ribosomal protein S19, chloroplastic
    • Protein or peptide: 30S ribosomal protein S20, chloroplastic
    • Protein or peptide: 30S ribosomal protein S21, chloroplastic
    • Protein or peptide: Ribosome-binding factor PSRP1, chloroplastic
    • Protein or peptide: 30S ribosomal protein S31, chloroplastic
    • Protein or peptide: bS1c
  • Ligand: MAGNESIUM ION
  • Ligand: ZINC ION

+
Supramolecule #1: Chloroplast ribosome in complex with RRF

SupramoleculeName: Chloroplast ribosome in complex with RRF / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#57
Source (natural)Organism: Spinacia oleracea (spinach)

+
Macromolecule #1: 23S ribosomal RNA

MacromoleculeName: 23S ribosomal RNA / type: rna / ID: 1 / Number of copies: 1
Source (natural)Organism: Spinacia oleracea (spinach)
Molecular weightTheoretical: 911.34425 KDa
SequenceString: UUCAAACGAG GAAAGGCUUA CGGUGGAUAC CUAGGCACCC AGAGACGAGG AAGGGCGUAU UAAUCGACGA AAUGCUUCGG GGAGUUGAA AAUAAGCAGA GAUCCGGAGA UUCCCGAAUA GGUCAACCUU UCGAACUUCU GCUGAAUCCA UGGGCAGGCA A GAGACAAC ...String:
UUCAAACGAG GAAAGGCUUA CGGUGGAUAC CUAGGCACCC AGAGACGAGG AAGGGCGUAU UAAUCGACGA AAUGCUUCGG GGAGUUGAA AAUAAGCAGA GAUCCGGAGA UUCCCGAAUA GGUCAACCUU UCGAACUUCU GCUGAAUCCA UGGGCAGGCA A GAGACAAC CUGGCGAACU GAAACAUCUU AGUAGCCAGA GGAAAAGAAA GCAAAAGCGA UUCCCGUAGU AGCGGCGAGC GA AAUGGGA GCAGCCUAAA CCGUGAAAAC GGGGUUGUGG GAGAGCAAUA CAAGCGUCGU GCUGCUAGGC GAAUCAGUGG AGU GCGGAA CCCUAGAUGG UGAAAGUCCA GUAGCCGAAA GCAUCACUAG CUUAUGCUCU GACCCGAGUA GCAUGGGGCA CGUG GAAUC CCGUGUGAAU CAGCAAGGAC CACCUUGCAA GGCUAAAUAC UCCUGGGUGA CCGAUAGCGA AGUAGUACCG UGAGG GAAG GGUGAAAAGA ACCCCCAUCG GGGAGUGAAA UAGAACAUGA AACCGUAAGC UCUCAAGCAG UGGGAGGGGG ACCAGA CCC UGACCGCGUG CCUGUUGAAG AAUGAGCCGG CGACUCAUAG GCAGUGGCUU GGUUAAGGGA ACCCACCGGA GCCGUAG CG AAAGCGAGUC UUCAUAGGGC AAUUGUCACU GCUUAUGGAC CCGAACCUGG GUGAUCUAUC CAUGACCAGG AUGAAGCU U GGGUGAAACU AAGUGGAGGU CCGAACCGAC UGAUGUUGAA GAAUCAGCGG AUGAGUUGUG GUUAGGGGUG AAAUGCCAC UCGAACCCAG AGCUAGCUGG UUCUCCCCGA AAUGCGUUGA GGCGCAGCAG UUGACUGGAC AUCUAGGGGU AAAGCACUGU UUCGGUGCG GGCCGCGAGA GCGGUACCAA AUCGAGGCAA ACUCUGAAUA CUAGAUAUGA CCUCCAAAUA ACAGGGGUCA A GGUCGGCC AGUGAGACGA UGGGGGAUAA GCUUCAUCGU CGAGAGGGAA ACAGCCCGGA UCACCAGCUA AGGCCCCUAA AU GACCGCU CAGUGAUAAA GGAGGUAGGG GUGCAGAGAC AGCCAGGAGG UUUGCCUAGA AGCAGCCACC CUUGAAAGAG UGC GUAAUA GCUCACUGAU CGAGCGCUCU UGCGCCGAAG AUGAACGGGG CUAAGCGGUC UGCCGAAGCU GUGGGAUGUA AAAA AACAU CGGUAGGGGA GCGUUCCGUG UUAGGGAGAA ACGCGUGCGU GAGCCGCGUU GGACGAAGCG GAAGCGAGAA UGUCG GCUU GAGUAACGCA AACAUUGGUG AGAAUCCAAU GCCCCGAAAA CCUAAGGGUU CCUCCGCAAG GUUCGUCCAC GGAGGG UGA GUCAGGGCCU AAGAUCAGGC CGAAAGGCGU AGUCGAUGGA CAACAGGUGA AUAUUCCUGU ACUACCCCUU GUUGGUC CC GAGGGACGGA GGAGGCUAGG UUAGCCGAAA GAUGGUUAUC GGUUCAAGGA CGCAAGGUGA CCCUGUUUUU CAGGGUAA G AAGGGGUAGA GAAAAUGCCU CGAGCCAAUG UUCGAGUACC AGGCGCUACG GCGCUGAAGU AACCGAUGCC AUACUCCCA GGAAAAGCUC GAACGACCUU CAACAAAAGG GUACCUGUAC CCGAAACCGA CACAGGUAGG UAGGUAGAGA AUACCUAGGG GCGCGAGAC AACUCUCUCU AAGGAACUCG GCAAAAUAGC CCCGUAACUU CGGGAGAAGG GGUGCCCCCU CACAAAGGGG G UCGAAGUG ACCAGGCCCG GGCGACUGUU UACCAAAAAC ACAGGUCUCC GCAAAGUCGU AAGACCAUGU AUGGGGGCUG AC GCCUGCC CAGUGCCGGA AGGUCAAGGA AGUUGGUGAC CUGAUGACAG GGGAGCCGGC GACCGAAGCC CCGGUGAACG GCG GCCGUA ACUAUAACGG UCCUAAGGUA GCGAAAUUCC UUGUCGGGUA AGUUCCGACC CGCACGAAAG GCGUAACGAU CUGG GCACU GUCUCGGAGA GAGGCUCGGU GAAAUAGACA UGUCUGUGAA GAUGCGGACU ACCUGCACCU GGACAGAAAG ACCCU AUGA AGCUUUACUG UUCCCUGGGA UUGGCUUUGG GCUUUUCCUG CGCAGCUUAG GUGGAAGGCG AAGAAGGCCC CCUUCC GGG GGGGCCCGAG CCAUCAGUGA GAUACCACUC UGGAAGAGCU AGAAUUCUAA CCUUGUGUCA GGACCUACGG GCCAAGG GA CAUUCUCAGG UAGACAGUUU CUAUGGGGCG UAGGCCUCCC AAAAGGUAAC GGAGGCGUGC AAAGGUUUCC UCGGGCCG G ACGGAGAUUG GCCCUCGAGU GCAAAGGCAG AAGGGAGCUU GACUGCAAGA CCCACCCGUC GAGCAGGGAC GAAAGUCGG CCUUAGUGAU CCGACGGUGC CGAGUGGAAG GGCCGUCGCU CAACGGAUAA AAGUUACUCU AGGGAUAACA GGCUGAUCUU CCCCAAGAG UUCACAUCGA CGGGAAGGUU UGGCACCUCG AUGUCGGCUC UUCGCCACCU GGGGCUGUAG UAUGUUCCAA G GGUUGGGC UGUUCGCCCA UUAAAGCGGU ACGUGAGCUG GGUUCAGAAC GUCGUGAGAC AGUUCGGUCC AUAUCCGGUG UG GGCGUUA GAGCAUUGAG AGGACCUUUC CCUAGUACGA GAGGACCGGG AAGGACGCAC CUCUGGUGUA CCAGUUAUCG UGC CCACGG UAAACGCUGG GUAGCCAAGU GCGGAGCGGA UAACUGCUGA AAGCAUCUAA GUAGUAAGCC CACCCCAAGA UGAG UGCUC UCCUA

+
Macromolecule #2: 4.5S ribosomal RNA

MacromoleculeName: 4.5S ribosomal RNA / type: rna / ID: 2 / Number of copies: 1
Source (natural)Organism: Spinacia oleracea (spinach)
Molecular weightTheoretical: 34.334488 KDa
SequenceString:
AGAGAAGGUC ACGGCGAGAC GAGCCGUUUA UCAUUACGAU AGGUGUCAAG UGGAAGUGCA GUGAUGUAUG CAGCUGAGGC AUCCUAACA GACCCACAGA CUUGAAC

+
Macromolecule #32: 5S ribosomal RNA

MacromoleculeName: 5S ribosomal RNA / type: rna / ID: 32 / Number of copies: 1
Source (natural)Organism: Spinacia oleracea (spinach)
Molecular weightTheoretical: 38.072648 KDa
SequenceString:
UUCUGGUGUC CUAGGCGUAG AGGAACCACA CCAAUCCAUC CCGAACUUGG UGGUUAAACU CUACUGCGGU GACGAUACUG UAGGGGAGG UCCUGCGGAA AAAUAGCUCG ACGCCAGGA

+
Macromolecule #34: 16S ribosomal RNA

MacromoleculeName: 16S ribosomal RNA / type: rna / ID: 34 / Number of copies: 1
Source (natural)Organism: Spinacia oleracea (spinach)
Molecular weightTheoretical: 480.38675 KDa
SequenceString: UCUCAUGGAG AGUUCGAUCC UGGCUCAGGA UGAACGCUGG CGGCAUGCUU AACACAUGCA AGUCGGACGG GAAGUGGUGU UUCCAGUGG CGGACGGGUG AGUAACGCGU AAGAACCUGC CCUUGGGAGG GGAACAACAG CUGGAAACGG CUGCUAAUAC C CCGUAGGC ...String:
UCUCAUGGAG AGUUCGAUCC UGGCUCAGGA UGAACGCUGG CGGCAUGCUU AACACAUGCA AGUCGGACGG GAAGUGGUGU UUCCAGUGG CGGACGGGUG AGUAACGCGU AAGAACCUGC CCUUGGGAGG GGAACAACAG CUGGAAACGG CUGCUAAUAC C CCGUAGGC UGAGAAGCAA AAGGAGGAAU CCGCCCGAGG AGGGGCUCGC GUCUGAUUAG CUAGUUGGUG AGGUAAUAGC UU ACCAAGG CGAUGAUCAG UAGCUGGUCC GAGAGGAUGA UCAGCCACAC UGGGACUGAG ACACGGCCCA GACUCCUACG GGA GGCAGC AGUGGGGAAU UUUCCGCAAU GGGCGAAAGC CUGACGGAGC AAUGCCGCGU GGAGGCAGAA GGCCCACGGG UCGU GAACU UCUUUUCCCG GAGAAGAAGC AAUGACGGUA UCCGGGGAAU AAGCAUCGGC UAACUCUGUG CCAGCAGCCG CGGUA AGAC AGAGGAUGCA AGCGUUAUCC GGAAUGAUUG GGCGUAAAGC GUCUGUAGGU GGCUUUUUAA GUCCGCCGUC AAAUCC CAG GGCUCAACCC UGGACAGGCG GUGGAAACUA CCAAGCUGGA GUACGGUAGG GGCAGAGGGA AUUUCCGGUG GAGCGGU GA AAUGCGUAGA GAUCGGAAAG AACACCAACG GCGAAAGCAC UCUGCUGGGC CGACACUGAC ACUGAGAGAC GAAAGCUA G GGGAGCGAAU GGGAUUAGAU ACCCCAGUAG UCCUAGCCGU AAACGAUGGA UACUAGGCGC UGUGCGUAUC GACCCGUGC AGUGUUGUAG CUAACGCGUU AAGUAUCCCG CCUGGGGAGU ACGUUCGCAA GAAUGAAACU CAAAGGAAUU GACGGGGGCC CGCACAAGC GGUGGAGCAU GUGGUUUAAU UCGAUGCAAA GCGAAGAACC UUACCAGGGC UUGACAUGCC GCGAAUCCUC U UGAAAGAG AGGGGUGCCU UCGGGAACGC GGACACAGGU GGUGCAUGGC UGUCGUCAGC UCGUGCCGUA AGGUGUUGGG UU AAGUCCC GCAACGAGCG CAACCCUCGU GUUUAGUUGC CAACGUUGAG UUUGGAACCC UGAACAGACU GCCGGUGAUA AGC CGGAGG AAGGUGAGGA UGACGUCAAG UCAUCAUGCC CCUUAUGCCC UGGGCGACAC ACGUGCUACA AUGGCCGGGA CAAA GGGUC GCGAUCCCGC GAGGGUGAGC UAACCCCAAA AACCCGUCCU CAGUUCGGAU UGCAGGCUGC AACUCGCCUG CAUGA AGCC GGAAUCGCUA GUAAUCGCCG GUCAGCCAUA CGGCGGUGAA UUCGUUCCCG GGCCUUGUAC ACACCGCCCG UCACAC UAU GGGAGCUGGC CAUGCCCGAA GUCGUUACCU UAACCGCAAG GAGGGGGAUG CCGAAGGCAG GGCUAGUGAC UGGAGUG AA GUCGUAACAA GGUAGCCGUA CUGGAAGGUG CGGCUGGAU

+
Macromolecule #3: 50S ribosomal protein L2, chloroplastic

MacromoleculeName: 50S ribosomal protein L2, chloroplastic / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 26.990314 KDa
SequenceString: NNLISGQRRC GKGRNARGII TARHRGGGHK RLYRKIDFRR NEKDIYGKIV TIEYDPNRNA YICLIHYGDG EKRYILHPRG AIIGDTIVS GTEVPIKMGN ALPLTDMPLG TAIHNIEITL GRGGQLARAA GAVAKLIAKE GKSATLKLPS GEVRLISKNC S ATVGQVGN ...String:
NNLISGQRRC GKGRNARGII TARHRGGGHK RLYRKIDFRR NEKDIYGKIV TIEYDPNRNA YICLIHYGDG EKRYILHPRG AIIGDTIVS GTEVPIKMGN ALPLTDMPLG TAIHNIEITL GRGGQLARAA GAVAKLIAKE GKSATLKLPS GEVRLISKNC S ATVGQVGN VGVNQKRLGR AGSKRWLGKR PVVRGVVMNP VDHPHGGGEG RAPIGRKSPT TPWGYPALGR RSRKRNKYSD NF IIRRRS

+
Macromolecule #4: 50S ribosomal protein L3, chloroplastic

MacromoleculeName: 50S ribosomal protein L3, chloroplastic / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 24.117328 KDa
SequenceString: SVDAGIGVMG TKLGMMSFFE EDGTVVPVTV IGFKEGNIVT QVKTESTDGY NAVQVGYERL RDRKLTMPER GHLNKAGVIP MRHLQEFRL VSVDDFTPSQ KLLFEELFKE GDMVDISGTT IGKGFQGGIK RHNFKRGLMT HGSKSHRALG SIGAGTTPGH V YKGKKMPG ...String:
SVDAGIGVMG TKLGMMSFFE EDGTVVPVTV IGFKEGNIVT QVKTESTDGY NAVQVGYERL RDRKLTMPER GHLNKAGVIP MRHLQEFRL VSVDDFTPSQ KLLFEELFKE GDMVDISGTT IGKGFQGGIK RHNFKRGLMT HGSKSHRALG SIGAGTTPGH V YKGKKMPG RMGGTKTKIR KLKIMKIDTD LRVVMIKGAV PGKPGNLLRL APAKIVGKNI PKN

+
Macromolecule #5: 50S ribosomal protein L4, chloroplastic

MacromoleculeName: 50S ribosomal protein L4, chloroplastic / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 23.802486 KDa
SequenceString: ELIPLPILNF SGEKVGETFL NLKTAPSETA RAVVHRGLIT HLQNKRRGTA STLTRAEVRG GGRKPYPQKK TGRARRGSQR SPLRPGGGV IFGPKPRDWT IKMNKKERRL ALSTAIASAV GNSFVVEEFA ENFEKPKTKD FIAAMQRWGL DPAEKSLFFL M DLVENVEK ...String:
ELIPLPILNF SGEKVGETFL NLKTAPSETA RAVVHRGLIT HLQNKRRGTA STLTRAEVRG GGRKPYPQKK TGRARRGSQR SPLRPGGGV IFGPKPRDWT IKMNKKERRL ALSTAIASAV GNSFVVEEFA ENFEKPKTKD FIAAMQRWGL DPAEKSLFFL M DLVENVEK SGRNIRTLKL LTPRSLNLFD VLNAEKLVFT EGTIQYLNQR YGVD

+
Macromolecule #6: 50S ribosomal protein L5, chloroplastic

MacromoleculeName: 50S ribosomal protein L5, chloroplastic / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 23.01583 KDa
SequenceString: ETINRLKTNY IEKMVPLLKE EFSYSNILEV PKVVKIVVNC GIGDASQNAK GLDAAINELA LITGQRPVKT KAKTSIAGFK VREGMTLGI AVTLRGNLMY SFLDRLINLA LPRTRDFQGV NPNSFDGHGN YSVGFREQSV FPEIKPEIVG KARGMDVCIT T TAKTDKEA ...String:
ETINRLKTNY IEKMVPLLKE EFSYSNILEV PKVVKIVVNC GIGDASQNAK GLDAAINELA LITGQRPVKT KAKTSIAGFK VREGMTLGI AVTLRGNLMY SFLDRLINLA LPRTRDFQGV NPNSFDGHGN YSVGFREQSV FPEIKPEIVG KARGMDVCIT T TAKTDKEA YKLLSLMGMP FREGSGPSTL VRKKKLKSHH FDAKKGRRY

+
Macromolecule #7: 50S ribosomal protein L6, chloroplastic

MacromoleculeName: 50S ribosomal protein L6, chloroplastic / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 19.132213 KDa
SequenceString:
GKQPITVPAN VAIAMEGQDL KVKGPLGELS ITYPREVLVE KQESGFLRVR KAVETRRANQ MHGLFRTLTD NMVVGVSKGF EKKLQLVGV GYRATVEGKD LILSLGFSHP VRMAIPDELQ VKVEENTKVT VSGRDKSVVG QFAATIRSWR PPEPYKGKGV R YVDEVVRR KEGK

+
Macromolecule #8: 50S ribosomal protein L9, chloroplastic

MacromoleculeName: 50S ribosomal protein L9, chloroplastic / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 5.212397 KDa
SequenceString:
KKVKKIRKII LKEDIPDLGK KGQLLDVRAG FLRNFLLPLG KAEVVT

+
Macromolecule #9: 50S ribosomal protein L13, chloroplastic

MacromoleculeName: 50S ribosomal protein L13, chloroplastic / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 22.991586 KDa
SequenceString: KSTSASTKCT EEWRQLKEAV KKEFAIPHVP LDQRWMFTLE EATGPDIWNT TWYPKSADHV PTDKKWYVVD ATDLILGRMA STIAIHIRG KNLASYTPSV DMGAFVIVVN ADKVAVSGKK RTQKLYRRHS GRPGGLKEET FDQLQKRIPE RIIEHAVRGM L PKGRLGRY ...String:
KSTSASTKCT EEWRQLKEAV KKEFAIPHVP LDQRWMFTLE EATGPDIWNT TWYPKSADHV PTDKKWYVVD ATDLILGRMA STIAIHIRG KNLASYTPSV DMGAFVIVVN ADKVAVSGKK RTQKLYRRHS GRPGGLKEET FDQLQKRIPE RIIEHAVRGM L PKGRLGRY LFNHLKVYKG AEHPHQAQQP IDLPLRDKRI RV

+
Macromolecule #10: 50S ribosomal protein L14, chloroplastic

MacromoleculeName: 50S ribosomal protein L14, chloroplastic / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 13.484741 KDa
SequenceString:
MIQPQTHLNV ADNSGARELM CIRIIGASNR RYARIGDVIV AVIKEAIPNT PLERSEVIRA VVVRTCKELK RDNGMIIRYD DNAAVIIDQ EGNPKGTRIF GAIARELRQK FAKIVSLAPE VL

+
Macromolecule #11: 50S ribosomal protein L15, chloroplastic

MacromoleculeName: 50S ribosomal protein L15, chloroplastic / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 20.063504 KDa
SequenceString:
TRFRLDNLGP QPGSRKKGKR KGRGHAAGQG GSCGFGMRGQ KSRSGPGIMR GFEGGQMPLY RRIPKLRGIA GGMRAGLPKY VPINLRDIE VAGFKEGEEV SLESLKAKGI INPSGRERRL PLKILGEGEL STKLQIKARA FSGSAKEKLE AAGCSVTVLP G RKKYIKES VRKNLARADE YFAKKR

+
Macromolecule #12: 50S ribosomal protein L16, chloroplastic

MacromoleculeName: 50S ribosomal protein L16, chloroplastic / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 15.271018 KDa
SequenceString:
MLSPKRTRFR KQHRGRMKGI SYRGNRICFG RYALQALEPA WITSRQIEAG RRAMTRNARR GGKIWVRIFP DKPVTVRPAE TRMGSGKGS PEYWVAVVKP GRILYEISGV AENIARRAVA IAASKMPIRT QFIIS

+
Macromolecule #13: 50S ribosomal protein L17, chloroplastic

MacromoleculeName: 50S ribosomal protein L17, chloroplastic / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 13.466902 KDa
SequenceString:
MKHGRKIHRL SRPADQRRAL LRGLTTQLLK HGRIKTTRAK ASAMRKYVDK MITLAKEGSL HKRRQALGFI YEKQIVHALF AEVPERYGD RNGGYTRIIR TLPRRGDNAP MAYIELV

+
Macromolecule #14: 50S ribosomal protein L18, chloroplastic

MacromoleculeName: 50S ribosomal protein L18, chloroplastic / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 13.601682 KDa
SequenceString:
AHTRREDRTA RHVRIRKKVE GTPERPRLCV FRSNKHLYVQ VIDDTKMHTL AAASTMQKAI SENIDYSAGP TVEVAQKIGE MIAKSCLEK GITKVAFDRG GYPYHGRVKA LADAAREHGL VF

+
Macromolecule #15: 50S ribosomal protein L19, chloroplastic

MacromoleculeName: 50S ribosomal protein L19, chloroplastic / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 13.544164 KDa
SequenceString:
QRVKLGDIMG ILNKKAVHAA EELRPVPGIR TGDIVQIRLE VPENKRRLSV YKGIVISRQN AGIHTTIRIR RIIAGVGVEI VFPLYSPNI KEIKVVSHRK VRKARLYYLR DKLPRLSTF

+
Macromolecule #16: 50S ribosomal protein L20, chloroplastic

MacromoleculeName: 50S ribosomal protein L20, chloroplastic / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 14.098663 KDa
SequenceString:
TRVKRGYIAR RRRKKIRFFA SSFRGAHSRL TRTIAQQKIR ALVSAHRDRD RQKRDFRRLW ITRINAAIRE RGVYYNYSKF IHDLYKRQL LLNRKILAQI AILNPNCIYM IYNEII

+
Macromolecule #17: 50S ribosomal protein L21, chloroplastic

MacromoleculeName: 50S ribosomal protein L21, chloroplastic / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 18.752543 KDa
SequenceString:
FEEFQRPPNQ KPQLSDVLPD DFQAPEPGTP EYNDIINQFL PKKGPPPPRE EIFAVVVIGS RQYIVIPGRW IYTQRLKGAT VNDKIVLNK VLLVGTKAST YIGTPIVTNA AVHAVVEEQL LDDKVIVFKY KKKKNYRRNI GHRQPITRIK ITGITGYEDY P ASTLE

+
Macromolecule #18: 50S ribosomal protein L22, chloroplastic

MacromoleculeName: 50S ribosomal protein L22, chloroplastic / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 19.826543 KDa
SequenceString:
EPGKCDEITT RGYSISMSVD KARRVIDQIR GRSYAETLMI LELMPYRACY PIFKLIYSAA ANASHNKQFN KANLIISKAE VNKGITLKK VKPRARGRSY MIKRPTCHIT IVLRDITHFD SYDKFLESLT PKKLIALLGL MSTGRRRELL CGRFRENHKI K SFLYKIAL FKR

+
Macromolecule #19: 50S ribosomal protein L23, chloroplastic

MacromoleculeName: 50S ribosomal protein L23, chloroplastic / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 10.576451 KDa
SequenceString:
KYPRRILDVY QILQSPIITE AAIKNIADEN SLLFTVDVRA DKKMIREAIS NFFGVKVRKV NTLIRPDGTK KAYIMLNKEY NASELAKKI GIF

+
Macromolecule #20: 50S ribosomal protein L24, chloroplastic

MacromoleculeName: 50S ribosomal protein L24, chloroplastic / type: protein_or_peptide / ID: 20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 14.487927 KDa
SequenceString:
IKRWERKDCK PNSLPKLHKM HVKVGDTVKV ISGGEKGKIG EISKIHKHNS TVIIKDLNLK TKHVKSKEEG EQGQIIKIEA AIHSSNVML YSKEQEVASR VGHKILEDGR KVRYLIKTGE IVDTPDRW

+
Macromolecule #21: 50S ribosomal protein L27, chloroplastic

MacromoleculeName: 50S ribosomal protein L27, chloroplastic / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 12.970976 KDa
SequenceString:
KKGAGSTKNG RDSKGQRLGV KIYGDQVAKP GAIIIRQRGT KFHPGKNVGI GKDHTIFALI DGLVKFEKYG PDKKKVSVYP REIQPENPN SYRARKRENF RLQREKKKAR REGYS

+
Macromolecule #22: 50S ribosomal protein L28, chloroplastic

MacromoleculeName: 50S ribosomal protein L28, chloroplastic / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 8.887555 KDa
SequenceString:
RRICPFTGKK SNKANRVSHS NHKTKRLQFV NLQYKRVWWE AGKRFVKLRL STKALKTIEK NGLDAVAKKA GIDLRK

+
Macromolecule #23: 50S ribosomal protein L29, chloroplastic

MacromoleculeName: 50S ribosomal protein L29, chloroplastic / type: protein_or_peptide / ID: 23 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 11.900054 KDa
SequenceString:
VKKEDELKEL RTKTNEQLNE EILQLKGELF MLRLQRSARE NFKPSDFGRM RKRVARMLTV KREREIEQGV GKRLSRKLDK AWKRSIVVR PPPSLKKLQE

+
Macromolecule #24: 50S ribosomal protein L31, chloroplastic

MacromoleculeName: 50S ribosomal protein L31, chloroplastic / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 7.622525 KDa
SequenceString:
RKSDIHPEFR EDAKVYCNGE LVMTTGGTQK DYTVEVWSGN HPFYLGNRSA LLLDADQVEK FRKKYG

+
Macromolecule #25: 50S ribosomal protein L32, chloroplastic

MacromoleculeName: 50S ribosomal protein L32, chloroplastic / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 5.604751 KDa
SequenceString:
AVPKKRTSIY KKRIRKNIWK KKGYWAALKA FSLAKSLSTG NSKSFFVR

+
Macromolecule #26: 50S ribosomal protein L33, chloroplastic

MacromoleculeName: 50S ribosomal protein L33, chloroplastic / type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 7.021255 KDa
SequenceString:
DVRVKVILEC TGCVRKSVNK GSRGVSRYIT QKNRHNTPSR LELRKFCPYC YKHTIHGEIK

+
Macromolecule #27: 50S ribosomal protein L34, chloroplastic

MacromoleculeName: 50S ribosomal protein L34, chloroplastic / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 6.789144 KDa
SequenceString:
GKAALCLTKR SRSRKSLART HGFRLRMSTT SGRALLKRRR AKGRKILCTK TNPSSGKRAS P

+
Macromolecule #28: 50S ribosomal protein L35, chloroplastic

MacromoleculeName: 50S ribosomal protein L35, chloroplastic / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 8.388086 KDa
SequenceString:
KGYKMKTHKA SAKRFRVTGK GKIVRRRAGK QHLLAKKNTK RKNRLSKLIQ VDRSDYDNVI GALPYLKVNR KV

+
Macromolecule #29: 50S ribosomal protein L36, chloroplastic

MacromoleculeName: 50S ribosomal protein L36, chloroplastic / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 4.414462 KDa
SequenceString:
MKIRASVRPI CEKCRLIRRR GRIIVICSNP KHKQRQG

+
Macromolecule #30: 50S ribosomal protein 6, chloroplastic

MacromoleculeName: 50S ribosomal protein 6, chloroplastic / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 5.316233 KDa
SequenceString:
SSRPQKKGTA HHMKTRPKKT ARWDIKRGPA VYPPLPPLPA EWTIVSS

+
Macromolecule #31: 50S ribosomal protein 5 alpha, chloroplastic

MacromoleculeName: 50S ribosomal protein 5 alpha, chloroplastic / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 6.093794 KDa
SequenceString:
SKLQLKLEQK IKMKMAKKIR LRRNRLMRKR KLRKRGAWPP SKMKKLKNV

+
Macromolecule #33: Ribosome-recycling factor, chloroplastic

MacromoleculeName: Ribosome-recycling factor, chloroplastic / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 21.643707 KDa
SequenceString:
ATMEEVEAEK SLIETNTKQR MEKTIETIRS NFNSVRTNRA SPTMLDRIEV EYYGTPVSLK SIAQISTPDA SSLLISPYDK SSLKAIEKA IVTSQLGVSP NNDGEVIRLS LPPLTSDRRK ELAKVVSKLA EEGKVAVRNI RRDALKSYEK LEKEKKLSED N VKDLSADL QKLTDEYMKK VESIYKQKEQ ELM

+
Macromolecule #35: 30S ribosomal protein S2, chloroplastic

MacromoleculeName: 30S ribosomal protein S2, chloroplastic / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 24.166172 KDa
SequenceString: HGTRKWNPRM SPYISAKCKG IHIINLTRTA RFLSEACDLV FDASSRGKQF LIVGTKNKAA DSVARAAIRA RCHYVNKKWL GGMLTNWST TETRLHKFRD LRMEQTAGRL ARLPKRDAAV VKRQLSHLQT YLGGIKYMTG LPDIVIIVDQ QEEYTALREC I TLGIPTIC ...String:
HGTRKWNPRM SPYISAKCKG IHIINLTRTA RFLSEACDLV FDASSRGKQF LIVGTKNKAA DSVARAAIRA RCHYVNKKWL GGMLTNWST TETRLHKFRD LRMEQTAGRL ARLPKRDAAV VKRQLSHLQT YLGGIKYMTG LPDIVIIVDQ QEEYTALREC I TLGIPTIC LIDTNCNPDL ADISIPANDD AIASIRLILT KLVFAICEGR SSYIRNP

+
Macromolecule #36: 30S ribosomal protein S3, chloroplastic

MacromoleculeName: 30S ribosomal protein S3, chloroplastic / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 24.833961 KDa
SequenceString: GQKINPLGFR LGTTQSHYSL WFSQPKNYAE GLQEDQKIRD CIKNYVQKNT KTSSGVEGIA RIEIQKRIDL IQVIIHMGFP KLLIENRPQ GVEDLKINVQ KELNCVNRKL NIAITRIAKP YGDPNILAEF IAGQLKSRVS FRKAMKKAIE LTEQADTKGI Q IQIAGRID ...String:
GQKINPLGFR LGTTQSHYSL WFSQPKNYAE GLQEDQKIRD CIKNYVQKNT KTSSGVEGIA RIEIQKRIDL IQVIIHMGFP KLLIENRPQ GVEDLKINVQ KELNCVNRKL NIAITRIAKP YGDPNILAEF IAGQLKSRVS FRKAMKKAIE LTEQADTKGI Q IQIAGRID GKEIARIEWI REGRVPLQTI RAKIDYCAYT VRTIYGVLGI KIWIFMGEE

+
Macromolecule #37: 30S ribosomal protein S4, chloroplastic

MacromoleculeName: 30S ribosomal protein S4, chloroplastic / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 23.323332 KDa
SequenceString: SRYRGPRFKK IRRLGALPGL TNKRPRAGSD LRNQSRSGKR SQYRIRLEEK QKLRFHYGIT ERQLLKYVRI ARKAKGSTGQ VLLQLLEMR LDNILFRLGM APTIPGARQL VNHRHILVNG RIVDIPSYRC KPQDTIMARD EQKSIALIQN SLDLSPREEL P KHLTLNPF ...String:
SRYRGPRFKK IRRLGALPGL TNKRPRAGSD LRNQSRSGKR SQYRIRLEEK QKLRFHYGIT ERQLLKYVRI ARKAKGSTGQ VLLQLLEMR LDNILFRLGM APTIPGARQL VNHRHILVNG RIVDIPSYRC KPQDTIMARD EQKSIALIQN SLDLSPREEL P KHLTLNPF PYKGLVNQII DSKWVGLKIN ELLVVEYYSR QT

+
Macromolecule #38: 30S ribosomal protein S5, chloroplastic

MacromoleculeName: 30S ribosomal protein S5, chloroplastic / type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 16.990775 KDa
SequenceString:
GFEENVVQVR RVTKVVKGGK HMRFRAIVVV GDKKGQVGVG VGKAKEVVSA VQKAAVDARR NIITVPMTKY LTFPHRNEAD YGAARVMLR PAAPGTGVIA GGAVRTVLEM AGVENALGKQ LGSNNALNNA RATIVAVQTM RQFSDVARDR GIPMEELWK

+
Macromolecule #39: 30S ribosomal protein S6 alpha, chloroplastic

MacromoleculeName: 30S ribosomal protein S6 alpha, chloroplastic / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 12.974879 KDa
SequenceString:
PQCPPGLRQY ETMAVLRPDM TEDERLTLTQ KYEELLVAGG AMYVEVFNRG VIPLAYSIKR KNKAGETNNY LDGIYLLFTY FTKPESISP LEAALVTDDD VIRSSSFKIR KRKY

+
Macromolecule #40: 30S ribosomal protein S7, chloroplastic

MacromoleculeName: 30S ribosomal protein S7, chloroplastic / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 16.804596 KDa
SequenceString:
SRRGTVEEKT AKSDPIYRNR LVNMLVNRIL KHGKKSLAYQ ILYRAVKKIQ QKTETNPLSV LRQAIRGVTP DIAVKARRVG GSTHQVPIE IGSTQGKALA IRWLLGAARK RPGRNMAFKL SSELVDAAKG SGDAVRKKEE THRMAEANRA FA

+
Macromolecule #41: 30S ribosomal protein S8, chloroplastic

MacromoleculeName: 30S ribosomal protein S8, chloroplastic / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 15.527256 KDa
SequenceString:
MGKDTIADII TCIRNADMNR KGTVRIVSTN ITENIVKILL REGFIENARK HQERNKYFLV LTLRHRRNKK GPYLNTFHLK RVSRPGLRI YSNYQRIPRI LGGMGIAILS TSRGIMTDRE ARLEGIGGEI LCYIW

+
Macromolecule #42: 30S ribosomal protein S9, chloroplastic

MacromoleculeName: 30S ribosomal protein S9, chloroplastic / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 15.479046 KDa
SequenceString:
EKFVKSRLPG GFAAQTVIGT GRRKCAIARV VLQEGTGKFI INYRDAKEYL QGNPLWLQYV KTPLATLGYE TNYDVFVKAH GGGLSGQAQ AISLGVARAL LKVSASHRAP LKQEGLLTRD SRIVERKKPG LKKARKAPQF SK

+
Macromolecule #43: 30S ribosomal protein S10 alpha, chloroplastic

MacromoleculeName: 30S ribosomal protein S10 alpha, chloroplastic / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 11.355478 KDa
SequenceString:
KIRIKLRSYW VPLIEDSCKQ IMDAARTTNA KIMGPVPLPT KKRIYCVLKS PHVHKDARFH FEIRTHQRLI DILYPTAQTI DSLMQLDLP AGVDVEVKL

+
Macromolecule #44: 30S ribosomal protein S11, chloroplastic

MacromoleculeName: 30S ribosomal protein S11, chloroplastic / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 11.844781 KDa
SequenceString:
VIHVQASFNN TIVTVTDVRG RVVSWASAGT CGFRGTKRGT PFAAQTAAGN AIRTVVEQGM QRAEVMIKGP GLGRDAALRA IRRSGILLS FVRDVTPMPH NGCRPPKKRR V

+
Macromolecule #45: 30S ribosomal protein S12, chloroplastic

MacromoleculeName: 30S ribosomal protein S12, chloroplastic / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 13.663064 KDa
SequenceString:
PTIKQLIRNT RQPIRNVTKS PALRGCPQRR GTCTRVYTIT PKKPNSALRK VARVRLTSGF EITAYIPGIG HNLQEHSVVL VRGGRVKDL PGVRYHIVRG TLDAVGVKDR QQGRSKYGVK KPK

+
Macromolecule #46: 30S ribosomal protein S13, chloroplastic

MacromoleculeName: 30S ribosomal protein S13, chloroplastic / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 13.077212 KDa
SequenceString:
VRVGNVEIPN NKRVEYSLQY IHGIGRSRAR QILCDLTLEN KLTKELSEDE LLQVRDEVTK YMIEGDLRRF NAIAIRRLKE IQCYRGVRH IQGLPCRGQR TKNNCRTLKR GK

+
Macromolecule #47: 30S ribosomal protein S14, chloroplastic

MacromoleculeName: 30S ribosomal protein S14, chloroplastic / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 11.728654 KDa
SequenceString:
ARKSLIQREK KRRNLEQKYH LIRRSSKQEI RKVTSLSDKW EIHGKLQSPP RNSAPARLHR RCFLTGRPRA NYRDFGLSGH ILREMVHTC LLPGATRSSW

+
Macromolecule #48: 30S ribosomal protein S15, chloroplastic

MacromoleculeName: 30S ribosomal protein S15, chloroplastic / type: protein_or_peptide / ID: 48 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 8.623268 KDa
SequenceString:
NKGSVEFQVF CFTNKIRRLT LHLELHKKDY SSQRGLRKTL GKRQRLLAYL LKINGVRYKE LISKLNIREL KT

+
Macromolecule #49: 30S ribosomal protein S16, chloroplastic

MacromoleculeName: 30S ribosomal protein S16, chloroplastic / type: protein_or_peptide / ID: 49 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 9.607287 KDa
SequenceString:
MVKLRLKRCG RKQRAVYRIV AIDVRSRREG RDLQKVGFYD PIKSQTYLNV PAILDFLEKG AQPTETVYDI LKRAEVFKEF R

+
Macromolecule #50: 30S ribosomal protein S17, chloroplastic

MacromoleculeName: 30S ribosomal protein S17, chloroplastic / type: protein_or_peptide / ID: 50 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 9.686324 KDa
SequenceString:
MRSMQGKVIC ATNDKTVNVE VVRLAPHPKY KRRVRKKKKY QAHDPDNQFK VGDWVQLDKC RPISKTKTFL AVAPEGRQSS ATRP

+
Macromolecule #51: 30S ribosomal protein S18, chloroplastic

MacromoleculeName: 30S ribosomal protein S18, chloroplastic / type: protein_or_peptide / ID: 51 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 6.281497 KDa
SequenceString:
RIDYRNMSLI SRFISEQGKI LSRRVNRLTL KQQRLITSAI KQARILSLLP FLN

+
Macromolecule #52: 30S ribosomal protein S19, chloroplastic

MacromoleculeName: 30S ribosomal protein S19, chloroplastic / type: protein_or_peptide / ID: 52 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 9.28199 KDa
SequenceString:
LKKNPFVANH LLRKIEKLNK KAEKEIIVTW SRASTIIPTM IGHTIAIHNG REHLPIYITD RMVGHKLGEF APTLNFRGHA K

+
Macromolecule #53: 30S ribosomal protein S20, chloroplastic

MacromoleculeName: 30S ribosomal protein S20, chloroplastic / type: protein_or_peptide / ID: 53 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 11.668623 KDa
SequenceString:
LKKADSAAKR TRQAETRRLR NKARKSEVKT RMRKVFEALD ALKKKSGAST EELVPIDNLI AEAYSAIDKA VVKGTLHRNT AARRKSRLA RNKKVVEIHH GWY

+
Macromolecule #54: 30S ribosomal protein S21, chloroplastic

MacromoleculeName: 30S ribosomal protein S21, chloroplastic / type: protein_or_peptide / ID: 54 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 7.353333 KDa
SequenceString:
AYNVQVLVDD NENEERLLNR FRREVMRAGV IQECKRRRYF ENKQEEKKRK HREAAKRNS

+
Macromolecule #55: Ribosome-binding factor PSRP1, chloroplastic

MacromoleculeName: Ribosome-binding factor PSRP1, chloroplastic / type: protein_or_peptide / ID: 55 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 11.938726 KDa
SequenceString:
SSVKLILQGR NLEVSDNVRS HVEDKVGKSV AKHSHLVREV DVRLSARGGD LSKGPKLRRC EVTLFTKRHG VIRAEEDAES LYSSIDLVS SIIQRKLRKI KDKVSDH

+
Macromolecule #56: 30S ribosomal protein S31, chloroplastic

MacromoleculeName: 30S ribosomal protein S31, chloroplastic / type: protein_or_peptide / ID: 56 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinach (spinach)
Molecular weightTheoretical: 4.104751 KDa
SequenceString:
GRGDRKTAKG KRFNHSFGNA RPKNKNKGRG PPKAPIF

+
Macromolecule #57: bS1c

MacromoleculeName: bS1c / type: protein_or_peptide / ID: 57 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Spinacia oleracea (spinach)
Molecular weightTheoretical: 14.485838 KDa
SequenceString: (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK) ...String:
(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)

+
Macromolecule #58: MAGNESIUM ION

MacromoleculeName: MAGNESIUM ION / type: ligand / ID: 58 / Number of copies: 343 / Formula: MG
Molecular weightTheoretical: 24.305 Da

+
Macromolecule #59: ZINC ION

MacromoleculeName: ZINC ION / type: ligand / ID: 59 / Number of copies: 2 / Formula: ZN
Molecular weightTheoretical: 65.409 Da

-
Experimental details

-
Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

-
Sample preparation

BufferpH: 7.4
VitrificationCryogen name: ETHANE

-
Electron microscopy

MicroscopeFEI TITAN KRIOS
Image recordingFilm or detector model: GATAN K2 QUANTUM (4k x 4k) / Detector mode: COUNTING / Average electron dose: 4.0 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

-
Image processing

Final reconstructionApplied symmetry - Point group: C1 (asymmetric) / Resolution.type: BY AUTHOR / Resolution: 3.0 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 130300
Initial angle assignmentType: PROJECTION MATCHING
Final angle assignmentType: PROJECTION MATCHING

-
Atomic model buiding 1

RefinementSpace: REAL / Protocol: AB INITIO MODEL
Output model

PDB-6eri:
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more