6EK6
Crystal structure of KDM5B in complex with S49195a.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Lysine-specific demethylase 5B,Lysine-specific demethylase 5B | polymer | 455 | 52725.6 | 1 | UniProt (Q9UGL1) Pfam (PF02373) Pfam (PF21323) Pfam (PF02928) In PDB | Homo sapiens (Human) | Cancer/testis antigen 31,CT31,Histone demethylase JARID1B,Jumonji/ARID domain-containing protein 1B,PLU-1,Retinoblastoma-binding protein 2 homolog 1,RBP2-H1,Cancer/testis antigen 31,CT31,Histone demethylase JARID1B,Jumonji/ARID domain-containing protein 1B,PLU-1,Retinoblastoma-binding protein 2 homolog 1,RBP2-H1 |
| 2 | A | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 3 | A | MANGANESE (II) ION | non-polymer | 54.9 | 1 | Chemie (MN) | |||
| 4 | A | NICKEL (II) ION | non-polymer | 58.7 | 1 | Chemie (NI) | |||
| 5 | A | N-{(3R)-1-[3-(propan-2-yl)-1H-pyrazole-5-carbonyl]pyrrolidin-3-yl}cyclopropanecarboxamide | non-polymer | 290.4 | 1 | Chemie (90V) | |||
| 6 | A | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 4 | Chemie (DMS) | |||
| 7 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
| 8 | water | water | 18.0 | 210 | Chemie (HOH) |
Sequence modifications
A: 26 - 99 (UniProt: Q9UGL1)
A: 375 - 754 (UniProt: Q9UGL1)
| PDB | External Database | Details |
|---|---|---|
| Met 25 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 52725.6 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 1216.4 | |
| All* | Total formula weight | 53942.0 |
