6DJW
Crystal Structure of pParkin (REP and RING2 deleted)-pUb-UbcH7 complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase | polymer | 349 | 39413.9 | 1 | UniProt (A0A034W4L8) Pfam (PF00240) Pfam (PF17976) Pfam (PF17978) In PDB | Bactrocera dorsalis (Oriental fruit fly) | Parkin |
2 | B | Ubiquitin | polymer | 74 | 8542.7 | 1 | UniProt (P62992) Pfam (PF00240) In PDB | Bos taurus (Bovine) | |
3 | C | Ubiquitin-conjugating enzyme E2 L3 | polymer | 159 | 18327.1 | 1 | UniProt (P68036) Pfam (PF00179) In PDB | Homo sapiens (Human) | E2 ubiquitin-conjugating enzyme L3, L-UBC, UbcH7, Ubiquitin carrier protein L3, Ubiquitin-conjugating enzyme E2-F1, Ubiquitin-protein ligase L3 |
4 | A | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) |
Sequence modifications
A: 29 - 160 (UniProt: A0A034W4L8)
A: 161 - 412 (UniProt: A0A034W4L8)
C: 1 - 154 (UniProt: P68036)
PDB | External Database | Details |
---|---|---|
Gly 20 | - | expression tag |
Gly 21 | - | expression tag |
Glu 22 | - | expression tag |
Asn 23 | - | expression tag |
Leu 24 | - | expression tag |
Tyr 25 | - | expression tag |
Leu 26 | - | expression tag |
Gly 27 | - | expression tag |
Gly 28 | - | expression tag |
C: 1 - 154 (UniProt: P68036)
PDB | External Database | Details |
---|---|---|
Gly -4 | - | expression tag |
Pro -3 | - | expression tag |
Leu -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
Lys 86 | Cys 86 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 66283.7 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 392.5 | |
All* | Total formula weight | 66676.1 |