6DJW
Crystal Structure of pParkin (REP and RING2 deleted)-pUb-UbcH7 complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004842 | molecular_function | ubiquitin-protein transferase activity |
A | 0005739 | cellular_component | mitochondrion |
A | 0005829 | cellular_component | cytosol |
A | 0008270 | molecular_function | zinc ion binding |
C | 0000151 | cellular_component | ubiquitin ligase complex |
C | 0000209 | biological_process | protein polyubiquitination |
C | 0003713 | molecular_function | transcription coactivator activity |
C | 0003723 | molecular_function | RNA binding |
C | 0004842 | molecular_function | ubiquitin-protein transferase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005524 | molecular_function | ATP binding |
C | 0005634 | cellular_component | nucleus |
C | 0005654 | cellular_component | nucleoplasm |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006355 | biological_process | regulation of DNA-templated transcription |
C | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
C | 0008283 | biological_process | cell population proliferation |
C | 0016567 | biological_process | protein ubiquitination |
C | 0016740 | molecular_function | transferase activity |
C | 0019787 | molecular_function | ubiquitin-like protein transferase activity |
C | 0019899 | molecular_function | enzyme binding |
C | 0031398 | biological_process | positive regulation of protein ubiquitination |
C | 0031625 | molecular_function | ubiquitin protein ligase binding |
C | 0032446 | biological_process | protein modification by small protein conjugation |
C | 0036211 | biological_process | protein modification process |
C | 0044770 | biological_process | cell cycle phase transition |
C | 0045893 | biological_process | positive regulation of DNA-templated transcription |
C | 0051443 | biological_process | positive regulation of ubiquitin-protein transferase activity |
C | 0061631 | molecular_function | ubiquitin conjugating enzyme activity |
C | 0070979 | biological_process | protein K11-linked ubiquitination |
C | 0071383 | biological_process | cellular response to steroid hormone stimulus |
C | 0071385 | biological_process | cellular response to glucocorticoid stimulus |
C | 0097027 | molecular_function | ubiquitin-protein transferase activator activity |
C | 0098793 | cellular_component | presynapse |
C | 1903955 | biological_process | positive regulation of protein targeting to mitochondrion |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue ZN A 1001 |
Chain | Residue |
A | CYS192 |
A | CYS195 |
A | CYS222 |
A | CYS229 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue ZN A 1002 |
Chain | Residue |
A | CYS177 |
A | CYS180 |
A | CYS246 |
A | HIS249 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue ZN A 1003 |
Chain | Residue |
A | CYS276 |
A | CYS295 |
A | CYS298 |
A | CYS273 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue ZN A 1004 |
Chain | Residue |
A | CYS288 |
A | HIS292 |
A | CYS324 |
A | CYS328 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue ZN A 1005 |
Chain | Residue |
A | CYS396 |
A | CYS399 |
A | HIS404 |
A | CYS408 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue ZN A 1006 |
Chain | Residue |
A | CYS367 |
A | CYS372 |
A | CYS387 |
A | CYS391 |
Functional Information from PROSITE/UniProt
site_id | PS00299 |
Number of Residues | 26 |
Details | UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD |
Chain | Residue | Details |
B | LYS27-ASP52 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | ACT_SITE: Glycyl thioester intermediate => ECO:0000255|PROSITE-ProRule:PRU00388, ECO:0000255|PROSITE-ProRule:PRU10133 |
Chain | Residue | Details |
C | LYS86 | |
B | ARG72 |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
C | LYS131 |
site_id | SWS_FT_FI3 |
Number of Residues | 1 |
Details | MOD_RES: Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P62979 |
Chain | Residue | Details |
B | SEP65 |
site_id | SWS_FT_FI4 |
Number of Residues | 8 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62979 |
Chain | Residue | Details |
B | LYS6 | |
B | LYS11 | |
B | LYS27 | |
B | LYS29 | |
B | LYS33 | |
B | LYS48 | |
B | LYS63 |
Catalytic Information from CSA