6DJT
Structure of TYW1 with a lysine-pyruvate adduct bound
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase | polymer | 331 | 39011.2 | 1 | UniProt (Q57705) Pfam (PF04055) Pfam (PF08608) | Methanocaldococcus jannaschii (Methanococcus jannaschii) | MjTYW1,tRNA wyosine derivatives biosynthesis protein Taw1 |
| 2 | B (A) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 1 | Chemie (SF4) | |||
| 3 | C, D, E, F, G... (A) | GLYCEROL | non-polymer | 92.1 | 8 | Chemie (GOL) | |||
| 4 | K, L (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) | |||
| 5 | M (A) | FE2/S3 CLUSTER | non-polymer | 208.9 | 1 | Chemie (FS0) | |||
| 6 | N (A) | water | water | 18.0 | 191 | Chemie (HOH) |
Sequence modifications
A: 1 - 311 (UniProt: Q57705)
| PDB | External Database | Details |
|---|---|---|
| Met -19 | - | expression tag |
| Gly -18 | - | expression tag |
| Ser -17 | - | expression tag |
| Ser -16 | - | expression tag |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Gly -7 | - | expression tag |
| Leu -6 | - | expression tag |
| Val -5 | - | expression tag |
| Pro -4 | - | expression tag |
| Arg -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 39011.2 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 1509.5 | |
| All* | Total formula weight | 40520.7 |
