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6CSP

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with cyclohexenylhydroxamate

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Hdac6 proteinpolymer36440285.52UniProt (A7YT55)
Pfam (PF00850)
UniProt (by SIFTS) (F8W4B7)
Danio rerio (Zebrafish)
2C, T
(A, B)
ZINC IONnon-polymer65.42Chemie (ZN)
3D, E, U, V
(A, B)
POTASSIUM IONnon-polymer39.14Chemie (K)
4F, G, H, W
(A, B)
CHLORIDE IONnon-polymer35.54Chemie (CL)
5I, X
(A, B)
N-hydroxycyclohex-1-ene-1-carboxamidenon-polymer141.22Chemie (FBM)
6AA, BA, CA, DA, EA...
(B, A)
1,2-ETHANEDIOLnon-polymer62.122Chemie (EDO)
7KA
(B)
DI(HYDROXYETHYL)ETHERnon-polymer106.11Chemie (PEG)
8LA, MA
(A, B)
waterwater18.0917Chemie (HOH)
Sequence modifications
A, B: 440 - 798 (UniProt: A7YT55)
PDBExternal DatabaseDetails
Ser 435-expression tag
Asn 436-expression tag
Ala 437-expression tag
Gly 438-expression tag
Gly 439-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight80571.0
Non-Polymers*Number of molecules35
Total formula weight2183.0
All*Total formula weight82753.9
*Water molecules are not included.

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PDB entries from 2025-06-18

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