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6CSP

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with cyclohexenylhydroxamate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
AFBM807

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH1044
AHOH1067

site_idAC4
Number of Residues2
Detailsbinding site for residue CL A 804
ChainResidue
AHIS614
BLYS658

site_idAC5
Number of Residues3
Detailsbinding site for residue CL A 805
ChainResidue
ALYS658
BHIS614
BHOH1126

site_idAC6
Number of Residues4
Detailsbinding site for residue CL A 806
ChainResidue
AGLY657
AHOH1252
AHOH1297
AHOH1308

site_idAC7
Number of Residues11
Detailsbinding site for residue FBM A 807
ChainResidue
AHIS573
AHIS574
AGLY582
APHE583
AASP612
AHIS614
APHE643
AASP705
ATYR745
AZN801
AHOH1173

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 808
ChainResidue
ALEU557
AARG736
AEDO809
AHOH912
BLEU557
BTHR558
BARG736

site_idAC9
Number of Residues6
Detailsbinding site for residue EDO A 809
ChainResidue
ALEU557
AARG736
AEDO808
AHOH903
BLEU557
BARG736

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 810
ChainResidue
ALYS512
AHIS516
AHOH909
AHOH926
BHOH912

site_idAD2
Number of Residues3
Detailsbinding site for residue EDO A 811
ChainResidue
AEDO815
BLYS658
BHOH987

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO A 812
ChainResidue
AALA707
AGLY709
AASP710
AGLY714
APHE715
AHOH915

site_idAD4
Number of Residues6
Detailsbinding site for residue EDO A 813
ChainResidue
ATYR448
AASP449
AARG488
AALA491
AHOH927
AHOH962

site_idAD5
Number of Residues6
Detailsbinding site for residue EDO A 814
ChainResidue
APRO719
AGLU720
AGLU752
AMET756
AHOH908
AHOH963

site_idAD6
Number of Residues6
Detailsbinding site for residue EDO A 815
ChainResidue
AHIS463
ASER531
AILE532
APHE583
AEDO811
AHOH1172

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO A 816
ChainResidue
AARG481
ASER484
AHOH913
AHOH1190
AHOH1217

site_idAD8
Number of Residues7
Detailsbinding site for residue EDO A 817
ChainResidue
AILE510
AGLU528
ATYR529
AHOH919
AHOH929
AHOH1169
BEDO808

site_idAD9
Number of Residues4
Detailsbinding site for residue ZN B 801
ChainResidue
BASP612
BHIS614
BASP705
BFBM805

site_idAE1
Number of Residues5
Detailsbinding site for residue K B 802
ChainResidue
BSER633
BLEU634
BASP610
BASP612
BHIS614

site_idAE2
Number of Residues6
Detailsbinding site for residue K B 803
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH1051
BHOH1088

site_idAE3
Number of Residues4
Detailsbinding site for residue CL B 804
ChainResidue
BHIS487
BARG488
BGLU647
BEDO810

site_idAE4
Number of Residues11
Detailsbinding site for residue FBM B 805
ChainResidue
BHIS573
BHIS574
BGLY582
BPHE583
BASP612
BHIS614
BPHE643
BASP705
BTYR745
BZN801
BHOH1206

site_idAE5
Number of Residues6
Detailsbinding site for residue EDO B 806
ChainResidue
BTRP459
BASN523
BASP770
BHIS771
BHOH919
BHOH998

site_idAE6
Number of Residues6
Detailsbinding site for residue EDO B 807
ChainResidue
BALA500
BLEU501
BCYS502
BHIS503
BLYS577
BHOH1121

site_idAE7
Number of Residues5
Detailsbinding site for residue EDO B 808
ChainResidue
ALYS506
AEDO817
BGLU515
BTYR539
BTHR540

site_idAE8
Number of Residues10
Detailsbinding site for residue EDO B 809
ChainResidue
AARG472
ATHR748
BARG472
BARG476
BTHR748
BSER751
BHOH901
BHOH907
BHOH1063
BHOH1086

site_idAE9
Number of Residues8
Detailsbinding site for residue EDO B 810
ChainResidue
BSER484
BCYS486
BGLU647
BLYS653
BCL804
BEDO813
BHOH914
BHOH917

site_idAF1
Number of Residues6
Detailsbinding site for residue EDO B 811
ChainResidue
BARG605
BTYR662
BPHE693
BTRP794
BHOH911
BHOH921

site_idAF2
Number of Residues5
Detailsbinding site for residue EDO B 812
ChainResidue
BHIS684
BLEU775
BILE783
BASN784
BHOH904

site_idAF3
Number of Residues8
Detailsbinding site for residue EDO B 813
ChainResidue
BSER484
BARG485
BCYS486
BSER646
BGLU647
BEDO810
BHOH994
BHOH1108

site_idAF4
Number of Residues6
Detailsbinding site for residue EDO B 814
ChainResidue
BHIS456
BMET458
BSER535
BASN536
BGLU537
BHOH1027

site_idAF5
Number of Residues7
Detailsbinding site for residue EDO B 815
ChainResidue
ASER513
AMET517
BARG451
BARG492
BLEU493
BLEU544
BHOH909

site_idAF6
Number of Residues4
Detailsbinding site for residue EDO B 816
ChainResidue
BHIS463
BILE532
BPHE583
BHOH1079

site_idAF7
Number of Residues7
Detailsbinding site for residue EDO B 817
ChainResidue
BPRO442
BLEU761
BLEU762
BGLY763
BHOH934
BHOH1041
BHOH1171

site_idAF8
Number of Residues5
Detailsbinding site for residue PEG B 818
ChainResidue
BASP652
BALA789
BHOH905
BHOH923
BHOH1178

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PDB entries from 2024-07-17

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