6BWY
DNA substrate selection by APOBEC3G
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | I, C, D, F | DNA (30-MER) | polymer | 30 | 9357.1 | 4 | synthetic construct | ||
2 | A, B, E, G | Protection of telomeres protein 1, DNA dC->dU-editing enzyme APOBEC-3G fusion | polymer | 361 | 41966.4 | 4 | UniProt (O13988) UniProt (Q9HC16) Pfam (PF02765) Pfam (PF05240) In PDB | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) | APOBEC-related cytidine deaminase,ARCD,APOBEC-related protein 9,ARP-9,CEM-15,CEM15,Deoxycytidine deaminase,A3G |
3 | G, I, C, D, F... | PHOSPHATE ION | non-polymer | 95.0 | 15 | Chemie (PO4) | |||
4 | A, B, E, G | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
5 | water | water | 18.0 | 57 | Chemie (HOH) |
Sequence modifications
A, B, E, G: 25 - 194 (UniProt: O13988)
A, B, E, G: 195 - 384 (UniProt: Q9HC16)
PDB | External Database | Details |
---|---|---|
Met 24 | - | initiating methionine |
PDB | External Database | Details |
---|---|---|
Lys 234 | Leu 234 | engineered mutation |
Ala 243 | Cys 243 | engineered mutation |
Lys 310 | Phe 310 | engineered mutation |
Ala 321 | Cys 321 | engineered mutation |
Ala 356 | Cys 356 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 205293.8 | |
Non-Polymers* | Number of molecules | 19 |
Total formula weight | 1686.2 | |
All* | Total formula weight | 206980.0 |