6BNK
Crystal structure of TCR-MHC-like molecule
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E | Antigen-presenting glycoprotein CD1d1 | polymer | 302 | 34662.0 | 2 | UniProt (A0A0R4J090) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609) In PDB | Mus musculus (Mouse) | MCG3074,isoform CRA_a |
2 | B, F | Beta-2-microglobulin | polymer | 99 | 11660.4 | 2 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
3 | C, G | NKT Valpha14 (MOUSE) - 2C12 TCR - Hybrid mouse variable and human constant domains | polymer | 207 | 22779.2 | 2 | Homo sapiens (Human) | ||
4 | D, H | NKT Vbeta8.2 (MOUSE) - 2C12 TCR - hybrid mouse variable and human constant domains | polymer | 242 | 27114.0 | 2 | Homo sapiens (Human) | ||
5 | I, J | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
6 | A, E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | |||
7 | A, E | N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE | non-polymer | 858.3 | 2 | Chemie (AGH) | |||
8 | water | water | 18.0 | 102 | Chemie (HOH) |
Sequence modifications
A, E: 1 - 279 (UniProt: A0A0R4J090)
PDB | External Database | Details |
---|---|---|
Gly 280 | - | expression tag |
Ser 281 | - | expression tag |
Leu 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
Ile 285 | - | expression tag |
Leu 286 | - | expression tag |
Asp 287 | - | expression tag |
Ala 288 | - | expression tag |
Gln 289 | - | expression tag |
Lys 290 | - | expression tag |
Met 291 | - | expression tag |
Val 292 | - | expression tag |
Trp 293 | - | expression tag |
Asn 294 | - | expression tag |
His 295 | - | expression tag |
Arg 296 | - | expression tag |
His 297 | - | expression tag |
His 298 | - | expression tag |
His 299 | - | expression tag |
His 300 | - | expression tag |
His 301 | - | expression tag |
His 302 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 8 |
Total formula weight | 192431.0 | |
Branched | Number of molecules | 2 |
Total formula weight | 848.8 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 2601.5 | |
All* | Total formula weight | 195881.3 |