5YVX
Crystal structure of SDG8 CW domain in complex with H3K4me1 peptide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Histone-lysine N-methyltransferase ASHH2 | polymer | 60 | 6909.7 | 1 | UniProt (Q2LAE1) Pfam (PF07496) | Arabidopsis thaliana (Mouse-ear cress) | ASH1 homolog 2,H3-K4-HMTase,Histone H3-K36 methyltransferase 8,H3-K36-HMTase 8,Protein EARLY FLOWERING IN SHORT DAYS,Protein LAZARUS 2,Protein SET DOMAIN GROUP 8 |
| 2 | B (C) | H3K4me1 | polymer | 9 | 1076.3 | 1 | UniProt (by SIFTS) (P59226) | Arabidopsis thaliana | |
| 3 | C (A) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 4 | D, E (A, C) | water | water | 18.0 | 84 | Chemie (HOH) |
Sequence modifications
A: 862 - 921 (UniProt: Q2LAE1)
| PDB | External Database | Details |
|---|---|---|
| Ala 917 | Glu 917 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 7986.0 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 65.4 | |
| All* | Total formula weight | 8051.4 |
