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5YPN

Crystal structure of NDM-1 bound to hydrolyzed meropenem representing an EI2 complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Metallo-beta-lactamase NDM-1polymer24225631.82UniProt (A0A0A7Y424)
Pfam (PF00753)
UniProt (by SIFTS) (E5KIY2)
Escherichia coli
2C, D, G, H
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
3E, I
(A, B)
(2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acidnon-polymer401.52Chemie (LMP)
4F, J
(A, B)
SULFATE IONnon-polymer96.12Chemie (SO4)
5K, L
(A, B)
waterwater18.0176Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight51263.6
Non-Polymers*Number of molecules8
Total formula weight1256.7
All*Total formula weight52520.4
*Water molecules are not included.

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PDB entries from 2024-10-30

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