5YDR
Structure of DNMT1 RFTS domain in complex with ubiquitin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, D) | Polyubiquitin-B | polymer | 75 | 8514.8 | 2 | UniProt (J3QS39) Pfam (PF00240) UniProt (by SIFTS) (P0CG47) | Homo sapiens (Human) | |
| 2 | B (B) | DNA (cytosine-5)-methyltransferase 1 | polymer | 250 | 27954.3 | 1 | UniProt (P26358) Pfam (PF12047) | Homo sapiens (Human) | Dnmt1,CXXC-type zinc finger protein 9,DNA methyltransferase HsaI,M.HsaI,MCMT |
| 3 | D, F (A, B) | PHOSPHATE ION | non-polymer | 95.0 | 2 | Chemie (PO4) | |||
| 4 | E (B) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 5 | G, H, I (A, B, D) | water | water | 18.0 | 235 | Chemie (HOH) |
Sequence modifications
A, D: 1 - 73 (UniProt: J3QS39)
B: 351 - 599 (UniProt: P26358)
| PDB | External Database | Details |
|---|---|---|
| Ala -1 | - | expression tag |
| His 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 350 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 44983.8 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 255.4 | |
| All* | Total formula weight | 45239.2 |
