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5YDR

Structure of DNMT1 RFTS domain in complex with ubiquitin

Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue PO4 A 101
ChainResidue
AALA-1
AHIS0
BLYS415

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN B 601
ChainResidue
BCYS353
BCYS356
BCYS414
BHIS418

site_idAC3
Number of Residues2
Detailsbinding site for residue PO4 B 602
ChainResidue
BHIS370
BASN457

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
ALYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
BCYS353
BCYS356
BCYS414
BHIS418

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Important for activity => ECO:0000250
ChainResidueDetails
BSER509

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:21947282
ChainResidueDetails
BLYS366

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
BSER394

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
BSER398
BSER549

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P13864
ChainResidueDetails
BSER509

223166

PDB entries from 2024-07-31

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