5Y9E
Crystal structure of HPV58 pentamer
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (A, B, C, D, E) | Major capsid protein L1 | polymer | 490 | 55250.5 | 5 | UniProt (P26535) Pfam (PF00500) | Human papillomavirus type 58 | |
| 2 | BA, CA, DA, F, G... (C, A, D, B, E) | GLYCEROL | non-polymer | 92.1 | 20 | Chemie (GOL) | |||
| 3 | AA, AB, BB, EA, FA... (B, E, C, A, D) | MAGNESIUM ION | non-polymer | 24.3 | 29 | Chemie (MG) | |||
| 4 | CB, DB, EB, FB, GB (A, B, C, D, E) | water | water | 18.0 | 1101 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E: 10 - 498 (UniProt: P26535)
| PDB | External Database | Details |
|---|---|---|
| Met 9 | - | initiating methionine |
| Ser 176 | Cys 202 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 276252.5 | |
| Non-Polymers* | Number of molecules | 49 |
| Total formula weight | 2546.7 | |
| All* | Total formula weight | 278799.2 |
