5Y9E
Crystal structure of HPV58 pentamer
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005198 | molecular_function | structural molecule activity |
| A | 0019028 | cellular_component | viral capsid |
| A | 0019062 | biological_process | virion attachment to host cell |
| A | 0039620 | cellular_component | T=7 icosahedral viral capsid |
| A | 0042025 | cellular_component | host cell nucleus |
| A | 0046718 | biological_process | symbiont entry into host cell |
| A | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
| B | 0005198 | molecular_function | structural molecule activity |
| B | 0019028 | cellular_component | viral capsid |
| B | 0019062 | biological_process | virion attachment to host cell |
| B | 0039620 | cellular_component | T=7 icosahedral viral capsid |
| B | 0042025 | cellular_component | host cell nucleus |
| B | 0046718 | biological_process | symbiont entry into host cell |
| B | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
| C | 0005198 | molecular_function | structural molecule activity |
| C | 0019028 | cellular_component | viral capsid |
| C | 0019062 | biological_process | virion attachment to host cell |
| C | 0039620 | cellular_component | T=7 icosahedral viral capsid |
| C | 0042025 | cellular_component | host cell nucleus |
| C | 0046718 | biological_process | symbiont entry into host cell |
| C | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
| D | 0005198 | molecular_function | structural molecule activity |
| D | 0019028 | cellular_component | viral capsid |
| D | 0019062 | biological_process | virion attachment to host cell |
| D | 0039620 | cellular_component | T=7 icosahedral viral capsid |
| D | 0042025 | cellular_component | host cell nucleus |
| D | 0046718 | biological_process | symbiont entry into host cell |
| D | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
| E | 0005198 | molecular_function | structural molecule activity |
| E | 0019028 | cellular_component | viral capsid |
| E | 0019062 | biological_process | virion attachment to host cell |
| E | 0039620 | cellular_component | T=7 icosahedral viral capsid |
| E | 0042025 | cellular_component | host cell nucleus |
| E | 0046718 | biological_process | symbiont entry into host cell |
| E | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue GOL A 501 |
| Chain | Residue |
| A | ALA37 |
| A | GLY38 |
| A | LYS453 |
| A | PHE461 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | binding site for residue GOL A 502 |
| Chain | Residue |
| A | ASP128 |
| A | ASN134 |
| A | HOH734 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | binding site for residue GOL A 503 |
| Chain | Residue |
| A | LEU306 |
| A | GOL504 |
| A | MG509 |
| A | HOH666 |
| C | GLU303 |
| A | ARG251 |
| A | ARG252 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 504 |
| Chain | Residue |
| A | ARG251 |
| A | GOL503 |
| A | MG509 |
| A | HOH703 |
| A | HOH758 |
| C | SER302 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue MG A 505 |
| Chain | Residue |
| A | GLN305 |
| A | PHE307 |
| A | ASN308 |
| A | ARG338 |
| A | HOH825 |
| B | HOH808 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 506 |
| Chain | Residue |
| A | ASP335 |
| A | ARG338 |
| A | SER339 |
| A | GLU367 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | binding site for residue MG A 507 |
| Chain | Residue |
| A | ARG41 |
| A | GLU368 |
| B | ASP233 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue MG A 508 |
| Chain | Residue |
| A | GLU107 |
| A | ASN308 |
| A | LYS466 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 509 |
| Chain | Residue |
| A | LEU250 |
| A | ARG251 |
| A | GOL503 |
| A | GOL504 |
| site_id | AD1 |
| Number of Residues | 3 |
| Details | binding site for residue MG A 510 |
| Chain | Residue |
| A | ASP370 |
| A | HOH702 |
| A | HOH717 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 511 |
| Chain | Residue |
| A | ASN356 |
| B | ASN144 |
| B | ARG145 |
| B | ALA264 |
| B | HOH740 |
| site_id | AD3 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 501 |
| Chain | Residue |
| B | SER302 |
| B | GLN305 |
| B | PHE307 |
| B | ASN308 |
| B | HOH638 |
| E | ARG251 |
| site_id | AD4 |
| Number of Residues | 7 |
| Details | binding site for residue GOL B 502 |
| Chain | Residue |
| A | ASP197 |
| A | HOH621 |
| A | HOH649 |
| B | ASN56 |
| B | ASN57 |
| B | HOH603 |
| B | HOH618 |
| site_id | AD5 |
| Number of Residues | 3 |
| Details | binding site for residue GOL B 503 |
| Chain | Residue |
| A | ASN56 |
| B | ASP197 |
| B | HOH726 |
| site_id | AD6 |
| Number of Residues | 2 |
| Details | binding site for residue GOL B 504 |
| Chain | Residue |
| B | GLU196 |
| B | LYS442 |
| site_id | AD7 |
| Number of Residues | 5 |
| Details | binding site for residue GOL B 505 |
| Chain | Residue |
| B | ASP129 |
| B | GLU131 |
| B | THR132 |
| B | HIS259 |
| B | HOH696 |
| site_id | AD8 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 506 |
| Chain | Residue |
| B | ASP244 |
| B | ASN320 |
| B | TRP325 |
| B | MET393 |
| B | HOH753 |
| site_id | AD9 |
| Number of Residues | 4 |
| Details | binding site for residue MG B 507 |
| Chain | Residue |
| B | SER67 |
| B | ARG72 |
| B | GLU367 |
| B | HOH652 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue MG B 508 |
| Chain | Residue |
| B | HIS169 |
| B | ASP209 |
| B | HOH823 |
| site_id | AE2 |
| Number of Residues | 4 |
| Details | binding site for residue MG B 509 |
| Chain | Residue |
| B | GLN156 |
| B | THR301 |
| B | GLN305 |
| B | HOH660 |
| site_id | AE3 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 510 |
| Chain | Residue |
| B | GLY68 |
| B | ASP335 |
| B | ARG338 |
| B | SER339 |
| B | GLU367 |
| site_id | AE4 |
| Number of Residues | 4 |
| Details | binding site for residue MG B 511 |
| Chain | Residue |
| B | PRO113 |
| B | ARG338 |
| B | THR340 |
| B | HOH801 |
| site_id | AE5 |
| Number of Residues | 4 |
| Details | binding site for residue GOL C 501 |
| Chain | Residue |
| C | ASP370 |
| A | SER239 |
| C | TYR36 |
| C | SER40 |
| site_id | AE6 |
| Number of Residues | 2 |
| Details | binding site for residue GOL C 502 |
| Chain | Residue |
| C | ASP197 |
| C | HOH708 |
| site_id | AE7 |
| Number of Residues | 3 |
| Details | binding site for residue GOL C 503 |
| Chain | Residue |
| C | ASP128 |
| C | ASN134 |
| C | ARG135 |
| site_id | AE8 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 504 |
| Chain | Residue |
| C | GLY68 |
| C | ASP335 |
| C | ARG338 |
| C | SER339 |
| C | GLU367 |
| site_id | AE9 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 505 |
| Chain | Residue |
| C | TYR231 |
| C | ARG251 |
| D | ARG338 |
| D | HOH635 |
| D | HOH790 |
| site_id | AF1 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 506 |
| Chain | Residue |
| C | GLY206 |
| C | CYS207 |
| D | GLN112 |
| D | MET342 |
| D | HOH778 |
| site_id | AF2 |
| Number of Residues | 4 |
| Details | binding site for residue MG C 507 |
| Chain | Residue |
| C | GLU107 |
| C | ASN308 |
| C | LYS466 |
| C | HOH804 |
| site_id | AF3 |
| Number of Residues | 3 |
| Details | binding site for residue MG C 508 |
| Chain | Residue |
| C | ASP233 |
| D | ARG41 |
| D | GLU368 |
| site_id | AF4 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 509 |
| Chain | Residue |
| C | ASN125 |
| C | ALA264 |
| C | GLY265 |
| D | TYR354 |
| D | ASN356 |
| site_id | AF5 |
| Number of Residues | 8 |
| Details | binding site for residue GOL D 501 |
| Chain | Residue |
| C | TYR234 |
| C | LEU235 |
| C | ALA238 |
| C | ARG251 |
| D | ASN308 |
| D | MG509 |
| D | HOH635 |
| D | HOH702 |
| site_id | AF6 |
| Number of Residues | 6 |
| Details | binding site for residue GOL D 502 |
| Chain | Residue |
| D | LEU43 |
| D | ALA44 |
| D | VAL45 |
| D | PRO64 |
| D | GOL504 |
| D | HOH683 |
| site_id | AF7 |
| Number of Residues | 4 |
| Details | binding site for residue GOL D 503 |
| Chain | Residue |
| D | HIS169 |
| D | ASP209 |
| D | THR228 |
| D | HOH675 |
| site_id | AF8 |
| Number of Residues | 4 |
| Details | binding site for residue GOL D 504 |
| Chain | Residue |
| D | ASP197 |
| D | GOL502 |
| D | HOH602 |
| D | HOH653 |
| site_id | AF9 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 505 |
| Chain | Residue |
| D | GLY68 |
| D | ASP335 |
| D | ARG338 |
| D | SER339 |
| D | GLU367 |
| site_id | AG1 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 506 |
| Chain | Residue |
| D | ASP128 |
| D | HOH614 |
| D | HOH654 |
| D | HOH747 |
| D | HOH794 |
| site_id | AG2 |
| Number of Residues | 4 |
| Details | binding site for residue MG D 507 |
| Chain | Residue |
| D | GLN156 |
| D | THR301 |
| D | GLN305 |
| D | HOH630 |
| site_id | AG3 |
| Number of Residues | 4 |
| Details | binding site for residue MG D 508 |
| Chain | Residue |
| A | ILE277 |
| D | GLU347 |
| D | LYS350 |
| D | HOH673 |
| site_id | AG4 |
| Number of Residues | 4 |
| Details | binding site for residue MG D 509 |
| Chain | Residue |
| D | GLU107 |
| D | ASN308 |
| D | LYS466 |
| D | GOL501 |
| site_id | AG5 |
| Number of Residues | 3 |
| Details | binding site for residue MG D 510 |
| Chain | Residue |
| D | ASP233 |
| E | ARG41 |
| E | GLU368 |
| site_id | AG6 |
| Number of Residues | 6 |
| Details | binding site for residue GOL E 501 |
| Chain | Residue |
| D | ASN282 |
| E | GLY141 |
| E | SER142 |
| E | ASP143 |
| E | ASN144 |
| E | HOH639 |
| site_id | AG7 |
| Number of Residues | 9 |
| Details | binding site for residue GOL E 502 |
| Chain | Residue |
| B | ASN308 |
| B | LYS466 |
| B | HOH624 |
| E | TYR234 |
| E | PHE249 |
| E | ARG251 |
| E | GLN317 |
| E | HOH702 |
| E | HOH730 |
| site_id | AG8 |
| Number of Residues | 6 |
| Details | binding site for residue GOL E 503 |
| Chain | Residue |
| D | LEU235 |
| D | SER239 |
| E | TYR36 |
| E | ASP370 |
| E | PRO462 |
| E | HOH613 |
| site_id | AG9 |
| Number of Residues | 5 |
| Details | binding site for residue GOL E 504 |
| Chain | Residue |
| E | PHE247 |
| E | PHE248 |
| E | TRP312 |
| E | ARG315 |
| E | ALA316 |
| site_id | AH1 |
| Number of Residues | 3 |
| Details | binding site for residue MG E 505 |
| Chain | Residue |
| E | ASP209 |
| E | HOH759 |
| E | HOH764 |
| site_id | AH2 |
| Number of Residues | 4 |
| Details | binding site for residue MG E 506 |
| Chain | Residue |
| E | HIS169 |
| E | ASP209 |
| E | HOH691 |
| E | HOH765 |
| site_id | AH3 |
| Number of Residues | 5 |
| Details | binding site for residue MG E 507 |
| Chain | Residue |
| B | ARG338 |
| B | HOH671 |
| E | TYR231 |
| E | ARG251 |
| E | HOH762 |
| site_id | AH4 |
| Number of Residues | 4 |
| Details | binding site for residue MG E 508 |
| Chain | Residue |
| E | VAL100 |
| E | TRP101 |
| E | CYS324 |
| E | ASN327 |
