5Y6F
Crystal structure of YcgR in complex with c-di-GMP from Escherichia coli
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Flagellar brake protein YcgR | polymer | 257 | 29418.8 | 1 | UniProt (P76010) Pfam (PF07317) Pfam (PF07238) | Escherichia coli (strain K12) | Cyclic di-GMP binding protein YcgR |
| 2 | B (A) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 3 | C, D (A) | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) | non-polymer | 690.4 | 2 | Chemie (C2E) | |||
| 4 | E (A) | water | water | 18.0 | 42 | Chemie (HOH) |
Sequence modifications
A: 1 - 244 (UniProt: P76010)
| PDB | External Database | Details |
|---|---|---|
| Lys 245 | - | expression tag |
| Leu 246 | - | expression tag |
| Ala 247 | - | expression tag |
| Ala 248 | - | expression tag |
| Ala 249 | - | expression tag |
| Leu 250 | - | expression tag |
| Glu 251 | - | expression tag |
| His 252 | - | expression tag |
| His 253 | - | expression tag |
| His 254 | - | expression tag |
| His 255 | - | expression tag |
| His 256 | - | expression tag |
| His 257 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 29418.8 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 1476.9 | |
| All* | Total formula weight | 30895.7 |
