5WBN
Crystal structure of fragment 3-(3-Benzyl-2-oxo-2H-[1,2,4]triazino[2,3-c]quinazolin-6-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Histone deacetylase 6 | polymer | 107 | 11932.6 | 1 | UniProt (Q9UBN7) Pfam (PF02148) | Homo sapiens (Human) | HD6 |
| 2 | B, C, D (A) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 3 | E (A) | 3-(3-benzyl-2-oxo-2H-[1,2,4]triazino[2,3-c]quinazolin-6-yl)propanoic acid | non-polymer | 360.4 | 1 | Chemie (9ZV) | |||
| 4 | F, G, H, I, J... (A) | UNKNOWN ATOM OR ION | non-polymer | 435.5 | 8 | Chemie (UNX) | |||
| 5 | N, O, P (A) | FORMIC ACID | non-polymer | 46.0 | 3 | Chemie (FMT) | |||
| 6 | Q (A) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 7 | R, S (A) | ACETATE ION | non-polymer | 59.0 | 2 | Chemie (ACT) | |||
| 8 | T (A) | water | water | 18.0 | 148 | Chemie (HOH) |
Sequence modifications
A: 1108 - 1213 (UniProt: Q9UBN7)
| PDB | External Database | Details |
|---|---|---|
| Gly 1107 | - | expression tag |
| Ser 1108 | Thr 1108 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 11932.6 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 4332.3 | |
| All* | Total formula weight | 16264.9 |
