5W2C
Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dAMPNPP
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | DNA polymerase kappa | polymer | 551 | 63287.1 | 2 | UniProt (Q9UBT6) Pfam (PF00817) Pfam (PF11798) Pfam (PF11799) In PDB | Homo sapiens (Human) | DINB protein,DINP |
2 | C, P | DNA (5'-D(P*CP*GP*GP*AP*TP*CP*GP*AP*C)-3') | polymer | 9 | 2740.8 | 2 | unidentified | ||
3 | D, T | DNA (5'-D(*CP*TP*AP*TP*(LDG)P*TP*CP*GP*AP*TP*CP*CP*G)-3') | polymer | 13 | 4222.8 | 2 | unidentified | ||
4 | A, B | MAGNESIUM ION | non-polymer | 24.3 | 6 | Chemie (MG) | |||
5 | A, B | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
6 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
7 | A, B | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) | |||
8 | A, B | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine | non-polymer | 490.2 | 2 | Chemie (DZ4) | |||
9 | water | water | 18.0 | 213 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 526 (UniProt: Q9UBT6)
PDB | External Database | Details |
---|---|---|
Met -24 | - | initiating methionine |
Ser -23 | - | expression tag |
Tyr -22 | - | expression tag |
Tyr -21 | - | expression tag |
His -20 | - | expression tag |
His -19 | - | expression tag |
His -18 | - | expression tag |
His -17 | - | expression tag |
His -16 | - | expression tag |
His -15 | - | expression tag |
Asp -14 | - | expression tag |
Tyr -13 | - | expression tag |
Asp -12 | - | expression tag |
Ile -11 | - | expression tag |
Pro -10 | - | expression tag |
Thr -9 | - | expression tag |
Thr -8 | - | expression tag |
Glu -7 | - | expression tag |
Asn -6 | - | expression tag |
Leu -5 | - | expression tag |
Tyr -4 | - | expression tag |
Phe -3 | - | expression tag |
Gln -2 | - | expression tag |
Gly -1 | - | expression tag |
Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 140501.5 | |
Non-Polymers* | Number of molecules | 14 |
Total formula weight | 1646.8 | |
All* | Total formula weight | 142148.3 |