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5W2C

Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dAMPNPP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MG A 601
ChainResidue
AASP107
AMET108
AASP198
ADZ4608

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 602
ChainResidue
AARG352
AVAL354
AILE357
AHOH702
CDA12

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 603
ChainResidue
AASP107
AASP198
AGLU199
ADZ4608
CDC13

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL A 604
ChainResidue
APHE171
AHOH706
AHOH708
DLDG6

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 605
ChainResidue
AMET117
AASN140
ATYR141
AHIS142
AHOH746

site_idAC6
Number of Residues1
Detailsbinding site for residue EDO A 606
ChainResidue
ALYS489

site_idAC7
Number of Residues2
Detailsbinding site for residue PEG A 607
ChainResidue
AGLU302
AASN330

site_idAC8
Number of Residues20
Detailsbinding site for residue DZ4 A 608
ChainResidue
AASP107
AMET108
AASP109
AALA110
APHE111
ATYR112
ASER137
ATHR138
ATYR141
AARG144
AASP198
ALYS328
AMG601
AMG603
AHOH729
AHOH734
AHOH737
AHOH738
CDC13
DDT5

site_idAC9
Number of Residues4
Detailsbinding site for residue MG B 601
ChainResidue
BASP107
BMET108
BASP198
BDZ4606

site_idAD1
Number of Residues4
Detailsbinding site for residue MG B 602
ChainResidue
BARG352
BVAL354
BILE357
PDA12

site_idAD2
Number of Residues5
Detailsbinding site for residue MG B 603
ChainResidue
BASP107
BASP198
BGLU199
BDZ4606
PDC13

site_idAD3
Number of Residues4
Detailsbinding site for residue GOL B 604
ChainResidue
BPHE171
BHOH703
BHOH708
TLDG6

site_idAD4
Number of Residues1
Detailsbinding site for residue PEG B 605
ChainResidue
BLYS489

site_idAD5
Number of Residues20
Detailsbinding site for residue DZ4 B 606
ChainResidue
BASP107
BMET108
BASP109
BALA110
BPHE111
BTYR112
BSER137
BTHR138
BTYR141
BARG144
BASP198
BLYS328
BMG601
BMG603
BHOH709
BHOH724
BHOH746
PDC13
TDT5
TLDG6

site_idAD6
Number of Residues18
Detailsbinding site for Di-nucleotide DT D 5 and LDG D 6
ChainResidue
DHOH102
DHOH105
DHOH106
AMET135
AALA151
AARG413
AGLU419
AARG420
ATHR421
AARG507
ALEU508
AGOL604
ADZ4608
CDA12
CDC13
DDA4
DDT7
DDC8

site_idAD7
Number of Residues18
Detailsbinding site for Di-nucleotide LDG D 6 and DT D 7
ChainResidue
AARG413
ASER417
AVAL418
AGLU419
AARG420
ATHR421
ALYS459
ALEU508
AGOL604
CDA12
CDC13
DDT5
DDC8
DHOH101
DHOH102
DHOH105
DHOH106
DHOH107

site_idAD8
Number of Residues21
Detailsbinding site for Di-nucleotide DT T 5 and LDG T 6
ChainResidue
BMET135
BARG413
BARG420
BTHR421
BARG507
BLEU508
BGOL604
BDZ4606
BHOH704
BHOH712
PDA12
PDC13
TDA4
TDT7
TDC8
THOH101
THOH102
THOH104
THOH106
THOH108
THOH109

site_idAD9
Number of Residues15
Detailsbinding site for Di-nucleotide LDG T 6 and DT T 7
ChainResidue
BARG413
BVAL418
BGLU419
BARG420
BTHR421
BLEU508
BGOL604
BDZ4606
BHOH704
PDA12
PDC13
TDT5
TDC8
THOH108
THOH109

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP107
AASP198
AGLU199
BASP107
BASP198
BGLU199

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PDB entries from 2024-07-24

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