5W2C
Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dAMPNPP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-03-10 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.709, 128.923, 167.705 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.010 - 2.500 |
R-factor | 0.21217 |
Rwork | 0.211 |
R-free | 0.25325 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.394 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.010 | 2.640 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.044 | 0.477 |
Number of reflections | 48405 | 7002 |
<I/σ(I)> | 16.3 | 2.7 |
Completeness [%] | 99.5 | 99.7 |
Redundancy | 4.4 | 4.5 |
CC(1/2) | 0.999 | 0.937 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295.15 | 25-30% PEG400, 0.2M ammonium nitrate |