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5VSD

Structure of human GLP SET-domain (EHMT1) in complex with inhibitor 13

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Histone-lysine N-methyltransferase EHMT1polymer26130232.42UniProt (Q9H9B1)
Pfam (PF05033)
Pfam (PF00856)
Homo sapiens (Human)Euchromatic histone-lysine N-methyltransferase 1,Eu-HMTase1,G9a-like protein 1,GLP1,Histone H3-K9 methyltransferase 5,H3-K9-HMTase 5,Lysine N-methyltransferase 1D
2C, J
(A, B)
S-ADENOSYLMETHIONINEnon-polymer398.42Chemie (SAM)
3D, E, F, G, K...
(A, B)
ZINC IONnon-polymer65.48Chemie (ZN)
4H, O
(A, B)
6,7-dimethoxy-N~2~-methyl-N~4~-(1-methylpiperidin-4-yl)-N~2~-propylquinazoline-2,4-diaminenon-polymer373.52Chemie (9HJ)
5I
(A)
1,4-DIETHYLENE DIOXIDEnon-polymer88.11Chemie (DIO)
6P, Q
(B)
GLYCEROLnon-polymer92.12Chemie (GOL)
7R, S
(A, B)
waterwater18.0529Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight60464.7
Non-Polymers*Number of molecules15
Total formula weight2339.4
All*Total formula weight62804.2
*Water molecules are not included.

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PDB entries from 2025-06-18

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