5VSD
Structure of human GLP SET-domain (EHMT1) in complex with inhibitor 13
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 74.864, 96.594, 102.478 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.906 - 1.850 |
R-factor | 0.194 |
Rwork | 0.192 |
R-free | 0.23530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5tuz |
RMSD bond length | 0.007 |
RMSD bond angle | 1.154 |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.910 | 19.906 | 1.950 |
High resolution limit [Å] | 1.850 | 5.850 | 1.850 |
Rmerge | 0.049 | 0.520 | |
Rmeas | 0.102 | 0.052 | 0.545 |
Rpim | 0.031 | 0.016 | 0.163 |
Total number of observations | 678018 | 21690 | 101062 |
Number of reflections | 62905 | ||
<I/σ(I)> | 18 | 39.1 | 4.1 |
Completeness [%] | 98.2 | 97.2 | 99.5 |
Redundancy | 10.8 | 10.1 | 11 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 9 | 290 | 7 % PEG 20K, 1.4% v/v 1,4-Dioxane, 10% glycerol, 0.07 M Bicine, pH 9.0 |