5V85
The crystal structure of the protein of DegV family COG1307 from Ruminococcus gnavus ATCC 29149 (alternative refinement of PDB 3JR7 with Vaccenic acid)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | EDD domain protein, DegV family | polymer | 298 | 33634.1 | 2 | UniProt (A7B6P0) Pfam (PF02645) | Ruminococcus gnavus ATCC 29149 | |
| 2 | C, H (A, B) | VACCENIC ACID | non-polymer | 282.5 | 2 | Chemie (VCA) | |||
| 3 | D, E, F, I (A, B) | PHOSPHATE ION | non-polymer | 95.0 | 4 | Chemie (PO4) | |||
| 4 | G, J (A, B) | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
| 5 | K, L (A, B) | water | water | 18.0 | 609 | Chemie (HOH) |
Sequence modifications
A, B: 2 - 298 (UniProt: A7B6P0)
| PDB | External Database | Details |
|---|---|---|
| Mse 1 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 67268.3 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 990.8 | |
| All* | Total formula weight | 68259.1 |
