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5V85

The crystal structure of the protein of DegV family COG1307 from Ruminococcus gnavus ATCC 29149 (alternative refinement of PDB 3JR7 with Vaccenic acid)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008289molecular_functionlipid binding
B0008289molecular_functionlipid binding
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue VCA A 301
ChainResidue
ALEU47
AGLY215
ATYR288
AHOH422
AHOH455
ATHR80
ASER81
ALEU108
ASER109
AARG137
APHE178
AARG191
ASER211

site_idAC2
Number of Residues6
Detailsbinding site for residue PO4 A 302
ChainResidue
AALA223
AARG224
ALYS232
APO4303
AHOH405
AHOH427

site_idAC3
Number of Residues6
Detailsbinding site for residue PO4 A 303
ChainResidue
AILE205
ALYS222
AARG224
APO4302
AHOH401
AHOH405

site_idAC4
Number of Residues6
Detailsbinding site for residue PO4 A 304
ChainResidue
AARG98
AGLN130
ATHR159
APHE160
AHOH403
AHOH408

site_idAC5
Number of Residues14
Detailsbinding site for residue VCA B 301
ChainResidue
BLEU47
BTHR80
BSER81
BCYS82
BLEU108
BSER109
BARG137
BPHE178
BARG191
BSER211
BGLY215
BTYR288
BHOH425
BHOH490

site_idAC6
Number of Residues7
Detailsbinding site for residue PO4 B 302
ChainResidue
AASN204
BLYS23
BCYS94
BASP95
BALA96
BHOH407
BHOH411

site_idAC7
Number of Residues1
Detailsbinding site for residue NA B 303
ChainResidue
BCYS77

222415

PDB entries from 2024-07-10

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