5V85
The crystal structure of the protein of DegV family COG1307 from Ruminococcus gnavus ATCC 29149 (alternative refinement of PDB 3JR7 with Vaccenic acid)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-10-04 |
Detector | SBC-3 |
Wavelength(s) | 0.97915 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 96.899, 96.899, 159.921 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.887 - 2.003 |
R-factor | 0.1699 |
Rwork | 0.169 |
R-free | 0.19770 |
Structure solution method | SAD |
RMSD bond length | 0.003 |
RMSD bond angle | 0.533 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | PHENIX ((dev_2614: ???)) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 83.920 |
High resolution limit [Å] | 2.000 |
Number of reflections | 58785 |
<I/σ(I)> | 17.85 |
Completeness [%] | 99.4 |
Redundancy | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.2M SODIUM CHLORIDE, 0.1M PHOSPHATE-CITRATE, 10%PEG3000, PH 4.2 |