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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

5U9G

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A16S ribosomal RNApolymer1539498725.41GenBank (944404559)Escherichia coli
20123S ribosomal RNApolymer2903941322.21GenBank (42756)Escherichia coli
3025S ribosomal RNApolymer11938483.91GenBank (1072784372)Escherichia coli
4YAlternative ribosome-rescue factor Apolymer728190.41UniProt (P36675)
Pfam (PF03889)
In PDB		Escherichia coli K-12
5X, WfMet-tRNA (P- and E-site)polymer7724802.82GenBank (1114191980)Escherichia coli
60350S ribosomal protein L1polymer23424765.71UniProt (B7MIX0)
Pfam (PF00687)
UniProt (by SIFTS) (P0A7L0)
In PDB		Escherichia coli
70450S ribosomal protein L2polymer27329923.61UniProt (D7Z9F8)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60422)
In PDB		Escherichia coli
80550S ribosomal protein L3polymer20922277.51UniProt (D7Z9F5)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)
In PDB		Escherichia coli
90650S ribosomal protein L4polymer20122121.61UniProt (D7Z9F6)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
100750S ribosomal protein L5polymer17920333.61UniProt (D7Z9G7)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
110850S ribosomal protein L6polymer17718932.81UniProt (D7Z9H0)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
120950S ribosomal protein L9polymer14915789.01UniProt (D7ZI15)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli
131050S ribosomal protein L10polymer16517736.61UniProt (D7ZA73)
Pfam (PF00466)
UniProt (by SIFTS) (P0A7J3)
In PDB		Escherichia coli
141150S ribosomal protein L11polymer14214894.41UniProt (D7ZA71)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (P0A7J7)
In PDB		Escherichia coli
151250S ribosomal protein L13polymer14216050.61UniProt (D7ZET0)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
161350S ribosomal protein L14polymer12313565.11UniProt (D7Z9G5)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
171450S ribosomal protein L15polymer14415008.51UniProt (D8BU19)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli
181550S ribosomal protein L16polymer13615312.31UniProt (D7Z9G2)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli
191650S ribosomal protein L17polymer12714423.71UniProt (B7N179)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
201750S ribosomal protein L18polymer11712794.71UniProt (D7Z9H1)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
211850S ribosomal protein L19polymer11513159.31UniProt (D7ZKU3)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
221950S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
232050S ribosomal protein L21polymer10311586.41UniProt (D7ZEN7)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
242150S ribosomal protein L22polymer11012253.41UniProt (D7Z9G0)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli
252250S ribosomal protein L23polymer10011222.21UniProt (D7X2Z9)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
262350S ribosomal protein L24polymer10411339.31UniProt (D7Z9G6)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli
272450S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli
282550S ribosomal protein L27polymer859146.51UniProt (D7ZEN6)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)
In PDB		Escherichia coli
292650S ribosomal protein L28polymer789027.61UniProt (S0YB49)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
302750S ribosomal protein L29polymer637286.51UniProt (D7Z9G3)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli
312850S ribosomal protein L30polymer596554.81UniProt (D7Z9H3)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
322950S ribosomal protein L31polymer707887.11UniProt (D7ZFP6)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli
333050S ribosomal protein L32polymer576463.41UniProt (D7ZGG2)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
343150S ribosomal protein L33polymer556388.61UniProt (D7Z9P0)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
353250S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
363350S ribosomal protein L35polymer657313.01UniProt (D7Z814)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli
373450S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
38Vtruncated mRNApolymer144597.81Escherichia coli
39ZPeptide chain release factor RF2polymer36541300.71UniProt (P07012)
Pfam (PF03462)
Pfam (PF00472)
In PDB		Escherichia coliRF-2
40B30S ribosomal protein S2polymer24126781.71UniProt (D7ZK99)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
In PDB		Escherichia coli
41C30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli
42D30S ribosomal protein S4polymer20623514.21UniProt (D7Z9H7)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli
43E30S ribosomal protein S5polymer16717629.41UniProt (D7Z9H2)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)
In PDB		Escherichia coli
44F30S ribosomal protein S6polymer13115211.11UniProt (D7ZI17)
Pfam (PF01250)
UniProt (by SIFTS) (P02358)
In PDB		Escherichia coli
45G30S ribosomal protein S7polymer15617637.41UniProt (D7ZAN1)
Pfam (PF00177)
UniProt (by SIFTS) (P02359)
In PDB		Escherichia coli
46H30S ribosomal protein S8polymer13014146.61UniProt (D7Z9G9)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli
47I30S ribosomal protein S9polymer13014886.31UniProt (D7ZES9)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli
48J30S ribosomal protein S10polymer10311755.61UniProt (D7Z9F4)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli
49K30S ribosomal protein S11polymer12913871.01UniProt (B7MCR3)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli
50L30S ribosomal protein S12polymer12413768.21UniProt (D7ZAN0)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
51M30S ribosomal protein S13polymer11813128.51UniProt (H4UQ02)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli
52N30S ribosomal protein S14polymer10111606.61UniProt (D7Z9G8)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli
53O30S ribosomal protein S15polymer8910290.81UniProt (D7ZEL4)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
54P30S ribosomal protein S16polymer829207.61UniProt (B7MIU7)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli
55Q30S ribosomal protein S17polymer849724.51UniProt (D7Z9G4)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli
56R30S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli
57S30S ribosomal protein S19polymer9210455.41UniProt (D7Z9F9)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli
58T30S ribosomal protein S20polymer879708.51UniProt (D7ZAS2)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)
In PDB		Escherichia coli
59U30S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli
60A, 01, 02, X, 14...MAGNESIUM IONnon-polymer24.3348Chemie (MG)
6134ZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
01: 1 - 2903 (GenBank: 42756)
PDBExternal DatabaseDetails
G 1847A 1847conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains60
Total formula weight2296683.8
Non-Polymers*Number of molecules349
Total formula weight8523.5
All*Total formula weight2305207.3
*Water molecules are not included.

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PDB entries from 2024-04-17

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