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5TZF

Structure of the BldD CTD(D116A)-(c-di-GMP)2 intermediate, form 1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1J, B, E, D, I...DNA-binding proteinpolymer9110113.48UniProt (F2RCL8)
Pfam (PF21179)
In PDB
Streptomyces venezuelae
2B, E, D, I, H...9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)non-polymer690.48Chemie (C2E)
3waterwater18.0171Chemie (HOH)
Sequence modifications
J, B, E, D, I, H, N, M: 80 - 166 (UniProt: F2RCL8)
PDBExternal DatabaseDetails
Gly 76-expression tag
Ser 77-expression tag
His 78-expression tag
Met 79-expression tag
Ala 116Asp 116engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight80907.0
Non-Polymers*Number of molecules8
Total formula weight5523.3
All*Total formula weight86430.3
*Water molecules are not included.

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PDB entries from 2024-09-04

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