5TZF
Structure of the BldD CTD(D116A)-(c-di-GMP)2 intermediate, form 1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (J, B, E, D, I...) | DNA-binding protein | polymer | 91 | 10113.4 | 8 | UniProt (F2RCL8) Pfam (PF21179) | Streptomyces venezuelae | |
| 2 | I, J, K, L, M... (B, E, D, I, H...) | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) | non-polymer | 690.4 | 8 | Chemie (C2E) | |||
| 3 | Q, R, S, T, U... (J, B, E, D, I...) | water | water | 18.0 | 171 | Chemie (HOH) |
Sequence modifications
J, B, E, D, I, H, N, M: 80 - 166 (UniProt: F2RCL8)
| PDB | External Database | Details |
|---|---|---|
| Gly 76 | - | expression tag |
| Ser 77 | - | expression tag |
| His 78 | - | expression tag |
| Met 79 | - | expression tag |
| Ala 116 | Asp 116 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 80907.0 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 5523.3 | |
| All* | Total formula weight | 86430.3 |
