5TZF
Structure of the BldD CTD(D116A)-(c-di-GMP)2 intermediate, form 1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| B | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| D | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| E | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| H | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| I | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| J | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| M | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| N | 0045892 | biological_process | negative regulation of DNA-templated transcription |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 13 |
| Details | binding site for residue C2E B 201 |
| Chain | Residue |
| B | ILE110 |
| J | ILE124 |
| J | ARG125 |
| J | GLN126 |
| J | HOH201 |
| B | GLN113 |
| B | ARG114 |
| B | ARG125 |
| B | ASP128 |
| B | C2E202 |
| J | LYS84 |
| J | ARG114 |
| J | SER123 |
| site_id | AC2 |
| Number of Residues | 11 |
| Details | binding site for residue C2E B 202 |
| Chain | Residue |
| B | ARG114 |
| B | SER123 |
| B | ILE124 |
| B | ARG125 |
| B | GLN126 |
| B | C2E201 |
| J | ILE110 |
| J | GLN113 |
| J | ARG114 |
| J | ARG125 |
| J | ASP128 |
| site_id | AC3 |
| Number of Residues | 12 |
| Details | binding site for residue C2E E 201 |
| Chain | Residue |
| D | ILE110 |
| D | GLN113 |
| D | ARG114 |
| D | ARG125 |
| D | ASP128 |
| D | C2E201 |
| E | LYS84 |
| E | ARG114 |
| E | SER123 |
| E | ILE124 |
| E | ARG125 |
| E | GLN126 |
| site_id | AC4 |
| Number of Residues | 13 |
| Details | binding site for residue C2E D 201 |
| Chain | Residue |
| D | LYS84 |
| D | ARG114 |
| D | SER123 |
| D | ILE124 |
| D | ARG125 |
| D | GLN126 |
| D | HOH301 |
| E | ILE110 |
| E | GLN113 |
| E | ARG114 |
| E | ARG125 |
| E | ASP128 |
| E | C2E201 |
| site_id | AC5 |
| Number of Residues | 12 |
| Details | binding site for residue C2E I 201 |
| Chain | Residue |
| H | LYS84 |
| H | ARG114 |
| H | SER123 |
| H | ILE124 |
| H | ARG125 |
| H | GLN126 |
| H | C2E201 |
| I | ILE110 |
| I | GLN113 |
| I | ARG114 |
| I | ARG125 |
| I | ASP128 |
| site_id | AC6 |
| Number of Residues | 17 |
| Details | binding site for residue C2E H 201 |
| Chain | Residue |
| H | TYR106 |
| H | ILE110 |
| H | GLN113 |
| H | ARG114 |
| H | ARG125 |
| H | ASP128 |
| H | HOH303 |
| H | HOH309 |
| H | HOH310 |
| I | LYS84 |
| I | ARG114 |
| I | SER123 |
| I | ILE124 |
| I | ARG125 |
| I | GLN126 |
| I | C2E201 |
| I | HOH308 |
| site_id | AC7 |
| Number of Residues | 16 |
| Details | binding site for residue C2E M 201 |
| Chain | Residue |
| M | TYR106 |
| M | ILE110 |
| M | GLN113 |
| M | ARG114 |
| M | ARG125 |
| M | ASP128 |
| M | C2E202 |
| M | HOH307 |
| M | HOH309 |
| M | HOH310 |
| N | LYS84 |
| N | ARG114 |
| N | SER123 |
| N | ILE124 |
| N | ARG125 |
| N | GLN126 |
| site_id | AC8 |
| Number of Residues | 13 |
| Details | binding site for residue C2E M 202 |
| Chain | Residue |
| M | GLN126 |
| M | C2E201 |
| M | HOH301 |
| N | ILE110 |
| N | GLN113 |
| N | ARG114 |
| N | ARG125 |
| N | ASP128 |
| M | LYS84 |
| M | ARG114 |
| M | SER123 |
| M | ILE124 |
| M | ARG125 |
