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5TIP

The Structure of the Major Capsid protein of PBCV-1

Replaces:  1M3Y
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
Major capsid proteinpolymer43648068.44UniProt (P30328)
Pfam (PF16903)
Pfam (PF04451)
Paramecium bursaria Chlorella virus 1 (PBCV-1)MCP, VP54
2E, F, J, N, Q
(E, F, J, N, Q)
6-deoxy-2,3-di-O-methyl-alpha-L-mannopyranose-(1-2)-beta-L-rhamnopyranose-(1-4)-beta-D-xylopyranose-(1-4)-[alpha-D-mannopyranose-(1-3)-alpha-D-rhamnopyranose-(1-3)][alpha-D-galactopyranose-(1-2)]alpha-L-fucopyranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-glucopyranosebranched1381.35In PDB
GlyTouCan (G08707KI)
3G, K, M, O, R
(G, K, M, O, R)
alpha-D-mannopyranose-(1-3)-alpha-D-rhamnopyranose-(1-3)-[alpha-D-galactopyranose-(1-2)][beta-D-xylopyranose-(1-4)]alpha-L-fucopyranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-glucopyranosebranched1060.95In PDB
GlyTouCan (G22683EH)
4H, L, S
(H, L, S)
alpha-L-fucopyranose-(1-3)-beta-D-glucopyranosebranched326.33In PDB
GlyTouCan (G08796XG)
5I
(I)
beta-L-rhamnopyranose-(1-4)-beta-D-xylopyranose-(1-4)-[alpha-D-galactopyranose-(1-2)][alpha-D-rhamnopyranose-(1-3)]alpha-L-fucopyranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-glucopyranosebranched1044.91In PDB
GlyTouCan (G08201UK)
6P
(P)
alpha-D-mannopyranose-(1-3)-alpha-D-rhamnopyranose-(1-3)-[beta-L-rhamnopyranose-(1-4)-beta-D-xylopyranose-(1-4)][alpha-D-galactopyranose-(1-2)]alpha-L-fucopyranose-(1-3)-[beta-D-xylopyranose-(1-4)]beta-D-glucopyranosebranched1207.11In PDB
GlyTouCan (G88961XM)
7T, U, V, X
(A, B, C, D)
MERCURY (II) IONnon-polymer200.64Chemie (HG)
8W
(C)
beta-D-glucopyranosenon-polymer180.21Chemie (BGC)
9AA, BA, Y, Z
(C, D, A, B)
waterwater18.01159Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight192273.7
BranchedNumber of molecules15
Total formula weight15442.1
Non-Polymers*Number of molecules5
Total formula weight982.5
All*Total formula weight208698.3
*Water molecules are not included.

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PDB entries from 2025-06-18

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