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5T6B

X-ray structure of the KijD1 C3-methyltransfeerase, converted to monomeric form

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, DSugar 3-C-methyl transferasepolymer41645983.84UniProt (B3TMQ9)
Pfam (PF08421)
Pfam (PF13489)
Pfam (PF08484)
In PDB
Actinomadura kijaniata
2A, B, C, DZINC IONnon-polymer65.44Chemie (ZN)
3A, B, C, DS-ADENOSYL-L-HOMOCYSTEINEnon-polymer384.44Chemie (SAH)
4A, B2-(N-MORPHOLINO)-ETHANESULFONIC ACIDnon-polymer195.22Chemie (MES)
5A, B, C, DTHYMIDINE-5'-PHOSPHATEnon-polymer322.24Chemie (TMP)
6waterwater18.0737Chemie (HOH)
Sequence modifications
A, B, C, D: 1 - 414 (UniProt: B3TMQ9)
PDBExternal DatabaseDetails
Gln -1-expression tag
His 0-expression tag
Met 92Lys 92engineered mutation
Arg 95Gln 95engineered mutation
Asp 96Arg 96engineered mutation
Phe 97Leu 97engineered mutation
Pro 105Ala 105engineered mutation
Glu 388Asp 388engineered mutation
His 398Arg 398engineered mutation
His 412Arg 412engineered mutation
Ile 413Val 413engineered mutation
Arg 414Leu 414engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight183935.0
Non-Polymers*Number of molecules14
Total formula weight3478.6
All*Total formula weight187413.6
*Water molecules are not included.

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PDB entries from 2024-07-17

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