Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5SVA

Mediator-RNA Polymerase II Pre-Initiation Complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ADNA-directed RNA polymerase II subunit RPB1polymer1733191821.61UniProt (P04050)
Pfam (PF04997)
Pfam (PF05001)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Pfam (PF04992)
Pfam (PF04990)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B1, DNA-directed RNA polymerase III largest subunit, RNA polymerase II subunit B220
2BDNA-directed RNA polymerase II subunit RPB2polymer1224138937.31UniProt (P08518)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF04566)
Pfam (PF04567)
Pfam (PF00562)
Pfam (PF04560)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit 2, B150, DNA-directed RNA polymerase II 140 kDa polypeptide
3CDNA-directed RNA polymerase II subunit RPB3polymer31835330.51UniProt (P16370)
Pfam (PF01193)
Pfam (PF01000)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B3, B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide
4DDNA-directed RNA polymerase II subunit RPB4polymer22125451.21UniProt (P20433)
Pfam (PF03874)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B4, B32, DNA-directed RNA polymerase II 32 kDa polypeptide
5EDNA-directed RNA polymerases I, II, and III subunit RPABC1polymer21525117.11UniProt (P20434)
Pfam (PF03871)
Pfam (PF01191)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC1, ABC27, DNA-directed RNA polymerases I, and III 27 kDa polypeptide
6FDNA-directed RNA polymerases I, II, and III subunit RPABC2polymer15517931.81UniProt (P20435)
Pfam (PF01192)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC2, ABC23, DNA-directed RNA polymerases I, and III 23 kDa polypeptide
7GDNA-directed RNA polymerase II subunit RPB7polymer17119081.11UniProt (P34087)
Pfam (PF03876)
Pfam (PF00575)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B7, B16
8HDNA-directed RNA polymerases I, II, and III subunit RPABC3polymer14616525.41UniProt (P20436)
Pfam (PF03870)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC3, ABC14.4, ABC14.5, DNA-directed RNA polymerases I, and III 14.5 kDa polypeptide
9IDNA-directed RNA polymerase II subunit RPB9polymer12214308.21UniProt (P27999)
Pfam (PF02150)
Pfam (PF01096)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B9, B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide, DNA-directed RNA polymerase II subunit 9
10JDNA-directed RNA polymerases I, II, and III subunit RPABC5polymer708290.71UniProt (P22139)
Pfam (PF01194)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC5, ABC10-beta, ABC8, DNA-directed RNA polymerases I, and III 8.3 kDa polypeptide
11KDNA-directed RNA polymerase II subunit RPB11polymer12013633.51UniProt (P38902)
Pfam (PF13656)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerase II subunit B11, B13.6, DNA-directed RNA polymerase II 13.6 kDa polypeptide
12LDNA-directed RNA polymerases I, II, and III subunit RPABC4polymer707730.01UniProt (P40422)
Pfam (PF03604)
In PDB
Saccharomyces cerevisiae (Baker's yeast)RNA polymerases I, II, and III subunit ABC4, ABC10-alpha
13MMediator of RNA polymerase II transcription subunit 6polymer29532844.71UniProt (P38782)
Pfam (PF04934)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Mediator complex subunit 6
14NMediator of RNA polymerase II transcription subunit 8polymer22325297.21UniProt (P38304)
Pfam (PF10232)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Mediator complex subunit 8
15OMediator of RNA polymerase II transcription subunit 11polymer11513324.21UniProt (Q99278)
Pfam (PF10280)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Mediator complex subunit 11
16PMediator of RNA polymerase II transcription subunit 17polymer68778582.81UniProt (P32569)
Pfam (PF10156)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Mediator complex subunit 17, Suppressor of RNA polymerase B 4
17QMediator of RNA polymerase II transcription subunit 18polymer30734316.51UniProt (P32585)
Pfam (PF09637)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Mediator complex subunit 18, Suppressor of RNA polymerase B 5
18RMediator of RNA polymerase II transcription subunit 20polymer21022918.11UniProt (P34162)
Pfam (PF08612)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Hyper-recombination suppressor protein 2, Mediator complex subunit 20, Suppressor of RNA polymerase B 2
19SMediator of RNA polymerase II transcription subunit 22polymer12113875.71UniProt (P32570)
Pfam (PF06179)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Mediator complex subunit 22, Suppressor of RNA polymerase B 6
20TMediator of RNA polymerase II transcription subunit 4polymer28432244.91UniProt (Q12343)
Pfam (PF10018)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Mediator complex subunit 4
21UMediator of RNA polymerase II transcription subunit 7polymer22225616.11UniProt (Q08278)
Pfam (PF05983)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Mediator complex subunit 7
22VMediator of RNA polymerase II transcription subunit 9polymer14917400.41UniProt (P33308)
Pfam (PF07544)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Chromosome segregation protein 2, Mediator complex subunit 9
23WMediator of RNA polymerase II transcription subunit 21polymer14016093.41UniProt (P47822)
Pfam (PF11221)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Mediator complex subunit 21, RNAPII complex component SRB7, Suppressor of RNA polymerase B 7
24XMediator of RNA polymerase II transcription subunit 31polymer12714747.71UniProt (P38633)
Pfam (PF05669)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Hpr1 suppressor protein 1, Mediator complex subunit 31
25YDNA repair helicase RAD3polymer77889899.01UniProt (P06839)
Pfam (PF06733)
Pfam (PF06777)
Pfam (PF13307)
In PDB
Saccharomyces cerevisiae (Baker's yeast)General transcription and DNA repair factor IIH subunit RAD3, TFIIH subunit RAD3
26ZDNA repair helicase RAD25polymer84395461.71UniProt (Q00578)
Pfam (PF13625)
Pfam (PF04851)
Pfam (PF16203)
In PDB
Saccharomyces cerevisiae (Baker's yeast)General transcription and DNA repair factor IIH subunit RAD25, TFIIH subunit RAD25, Suppressor of stem-loop mutation 2
27aRNA polymerase II transcription factor B subunit 2polymer51358602.31UniProt (Q02939)
Pfam (PF03849)
Pfam (PF18307)
In PDB
Saccharomyces cerevisiae (Baker's yeast)General transcription and DNA repair factor IIH subunit TFB2, TFIIH subunit TFB2, RNA polymerase II transcription factor B 52 kDa subunit, RNA polymerase II transcription factor B p52 subunit
28bRNA polymerase II transcription factor B subunit 5polymer728243.51UniProt (Q3E7C1)
Pfam (PF06331)
In PDB
Saccharomyces cerevisiae (Baker's yeast)General transcription and DNA repair factor IIH subunit TFB5, TFIIH subunit TFB5
29cTranscription initiation factor IIBpolymer34538257.31UniProt (P29055)
Pfam (PF08271)
Pfam (PF00382)
In PDB
Saccharomyces cerevisiae (Baker's yeast)General transcription factor TFIIB, Transcription factor E
30dTranscription initiation factor IIA large subunitpolymer28632230.81UniProt (P32773)
Pfam (PF03153)
In PDB
Saccharomyces cerevisiae (Baker's yeast)TFIIA large subunit, TFIIA 32 kDa subunit
31eTranscription initiation factor IIA subunit 2polymer12213473.11UniProt (P32774)
Pfam (PF02268)
Pfam (PF02751)
In PDB
Saccharomyces cerevisiae (Baker's yeast)General transcription factor IIA subunit 2, TFIIA 13.5 kDa subunit, Transcription initiation factor IIA small chain, Transcription initiation factor IIA small subunit
32fTranscription initiation factor IIF subunit alphapolymer73582320.61UniProt (P41895)
Pfam (PF05793)
In PDB
Saccharomyces cerevisiae (Baker's yeast)TFIIF-alpha, TFIIF large subunit, Transcription factor G 105 kDa subunit, P105
33gTranscription initiation factor IIF subunit betapolymer40046684.51UniProt (P41896)
Pfam (PF17683)
Pfam (PF02270)
In PDB
Saccharomyces cerevisiae (Baker's yeast)ATP-dependent helicase TFG2, TFIIF medium subunit, TFIIF-beta, Transcription factor G 54 kDa subunit
34hTranscription initiation factor IIE subunit alphapolymer48254804.81UniProt (P36100)
Pfam (PF02002)
In PDB
Saccharomyces cerevisiae (Baker's yeast)TFIIE-alpha, Factor A 66 kDa subunit, Transcription factor A large subunit
35iTranscription initiation factor IIE subunit betapolymer32837050.41UniProt (P36145)
Pfam (PF02186)
Pfam (PF18121)
Pfam (PF22254)
In PDB
Saccharomyces cerevisiae (Baker's yeast)TFIIE-beta, Factor A 43 kDa subunit, Transcription factor A small subunit
36jTATA-box-binding proteinpolymer24027042.31UniProt (P13393)
Pfam (PF00352)
In PDB
Saccharomyces cerevisiae (Baker's yeast)TATA sequence-binding protein, TBP, TATA-binding factor, TATA-box factor, Transcription factor D, Transcription initiation factor TFIID TBP subunit
37kDNA-directed RNA polymerase II subunit RPB1polymer252611.71UniProt (P04050)
Pfam (PF05001)
In PDB
Saccharomyces cerevisiaeRNA polymerase II subunit B1, DNA-directed RNA polymerase III largest subunit, RNA polymerase II subunit B220
38l108bp HIS4 Promoter Non-template Strand (-92/+16)polymer10833323.41Saccharomyces cerevisiae
39m108bp HIS4 Promoter Template Strand (+16/-92)polymer10833305.41Saccharomyces cerevisiae
40nTranscription initiation factor TFIID subunit 14polymer24427473.21UniProt (P35189)
Pfam (PF03366)
Pfam (PF17035)
In PDB
Saccharomyces cerevisiae (Baker's yeast)Actin non-complementing mutant 1, Chromosome stability protein 10, SWI/SNF chromatin-remodeling complex subunit TAF14, SWI/SNF complex 29 kDa subunit, SWI/SNF complex subunit TAF14, TBP-associated factor 14, TBP-associated factor 30 kDa, Transcription factor G 30 kDa subunit, Transcription initiation factor TFIIF 30 kDa subunit
41A, B, C, I, J...ZINC IONnon-polymer65.48Chemie (ZN)
42AMAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains40
Total formula weight1522203.9
Non-Polymers*Number of molecules9
Total formula weight547.6
All*Total formula weight1522751.5
*Water molecules are not included.

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon