5NUZ
Junin virus GP1 glycoprotein in complex with an antibody Fab fragment
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, H) | eOD01 heavy chain | polymer | 231 | 25127.1 | 2 | Mus musculus (house mouse) | ||
| 2 | C, E (B, L) | eOD01 light chain | polymer | 221 | 24186.6 | 2 | Mus musculus (house mouse) | ||
| 3 | D, F (C, D) | Pre-glycoprotein polyprotein GP complex | polymer | 156 | 18095.6 | 2 | UniProt (C1K9J9) Pfam (PF00798) | Junin mammarenavirus | |
| 4 | G (E) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G09724ZC) | |||
| 5 | H (F) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1559.4 | 1 | In PDB GlyTouCan (G83161QT) | |||
| 6 | I, J, K, N, O... (A, H, B, C, L) | GLYCEROL | non-polymer | 92.1 | 11 | Chemie (GOL) | |||
| 7 | L, M, P, Q, R... (A, H, L) | ISOPROPYL ALCOHOL | non-polymer | 60.1 | 6 | Chemie (IPA) | |||
| 8 | AA, BA, V (D, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
| 9 | CA, DA, EA, FA, GA... (A, H, B, C, L...) | water | water | 18.0 | 900 | Chemie (HOH) |
Sequence modifications
C, D: 87 - 232 (UniProt: C1K9J9)
| PDB | External Database | Details |
|---|---|---|
| Glu 84 | - | expression tag |
| Thr 85 | - | expression tag |
| Gly 86 | - | expression tag |
| Lys 233 | - | expression tag |
| His 234 | - | expression tag |
| His 235 | - | expression tag |
| His 236 | - | expression tag |
| His 237 | - | expression tag |
| His 238 | - | expression tag |
| His 239 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 134818.6 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 2632.3 | |
| Non-Polymers* | Number of molecules | 20 |
| Total formula weight | 2037.2 | |
| All* | Total formula weight | 139488.2 |
