5NUZ

Junin virus GP1 glycoprotein in complex with an antibody Fab fragment

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, H	eOD01 heavy chain	polymer	231	25127.1	2		Mus musculus (house mouse)
2	B, L	eOD01 light chain	polymer	221	24186.6	2		Mus musculus (house mouse)
3	C, D	Pre-glycoprotein polyprotein GP complex	polymer	156	18095.6	2	UniProt (C1K9J9) Pfam (PF00798) In PDB	Junin mammarenavirus
4	E	alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		1073.0	1	In PDB GlyTouCan (G09724ZC)
5	F	alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		1559.4	1	In PDB GlyTouCan (G83161QT)
6	A, H, B, C, L	GLYCEROL	non-polymer		92.1	11	Chemie (GOL)
7	A, H, L	ISOPROPYL ALCOHOL	non-polymer		60.1	6	Chemie (IPA)
8	D, C	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	3	Chemie (NAG)
9		water	water		18.0	900	Chemie (HOH)

Sequence modifications

C, D: 87 - 232 (UniProt: C1K9J9)

PDB	External Database	Details
Glu 84	-	expression tag
Thr 85	-	expression tag
Gly 86	-	expression tag
Lys 233	-	expression tag
His 234	-	expression tag
His 235	-	expression tag
His 236	-	expression tag
His 237	-	expression tag
His 238	-	expression tag
His 239	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	6
	Total formula weight	134818.6
Branched	Number of molecules	2
	Total formula weight	2632.3
Non-Polymers*	Number of molecules	20
	Total formula weight	2037.2
All*	Total formula weight	139488.2

*Water molecules are not included.