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5NM5

Tubulin Darpin room-temperature structure in complex with Colchicine determined by serial millisecond crystallography

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Tubulin alpha-1B chainpolymer45150204.41UniProt (P81947)
Pfam (PF00091)
Pfam (PF03953)
Bos taurus (Bovine)Alpha-tubulin ubiquitous,Tubulin K-alpha-1,Tubulin alpha-ubiquitous chain
2B
(B)
Tubulin beta-2B chainpolymer44549999.91UniProt (Q6B856)
Pfam (PF00091)
Pfam (PF03953)
Bos taurus (Bovine)
3C
(F)
Designed Ankyrin Repeat Protein (DARPIN) D1polymer16918068.41synthetic construct
4D
(A)
GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
PubChem (177679032)
PubChem (135400627)
PubChem (135487750)
PubChem (136088935)
PubChem (136803486)
PubChem (135398633)
PubChem (135544356)
PubChem (135547949)
PubChem (135600366)
PubChem (135749822)
PubChem (136005188)
PubChem (136073923)
PubChem (136240914)
PubChem (136664747)
PubChem (136772743)
PubChem (136772744)
PubChem (136803487)
PubChem (137286749)
PubChem (164715984)
PubChem (171699466)
5E
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
PubChem (888)
6F
(B)
GUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
PubChem (136073927)
PubChem (135398619)
PubChem (135402030)
PubChem (135431654)
PubChem (135566337)
PubChem (135760556)
PubChem (136026707)
PubChem (136053418)
PubChem (136663964)
PubChem (136664748)
PubChem (136759848)
PubChem (136759849)
PubChem (136759850)
PubChem (136836636)
PubChem (136847074)
PubChem (172898537)
7G
(B)
N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamidenon-polymer399.41Chemie (LOC)
PubChem (6167)
PubChem (53278)
PubChem (2833)
8H, I, J
(A, B, F)
waterwater18.074Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight118272.8
Non-Polymers*Number of molecules4
Total formula weight1390.1
All*Total formula weight119662.9
*Water molecules are not included.

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PDB entries from 2026-05-06

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