5N11
Crystal structure of Human beta1-coronavirus OC43 NL/A/2005 Hemagglutinin-Esterase
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Hemagglutinin-esterase | polymer | 376 | 42386.2 | 2 | UniProt (Q4VID6) Pfam (PF03996) Pfam (PF02710) | Human coronavirus OC43 (HCoV-OC43) | HE protein,E3 glycoprotein |
| 2 | C, D, E, G, H... (C, D, E, G, H...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 3 | F (F) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G10756ZZ) | |||
| 4 | I (I) | alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G34442SS) | |||
| 5 | K (K) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 6 | L (L) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
| 7 | M, N, O, P, R... (A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 10 | Chemie (NAG) | |||
| 8 | Q, X (A, B) | ACETIC ACID | non-polymer | 60.1 | 2 | Chemie (ACY) | |||
| 9 | Y, Z (A, B) | water | water | 18.0 | 49 | Chemie (HOH) |
Sequence modifications
A, B: 19 - 387 (UniProt: Q4VID6)
| PDB | External Database | Details |
|---|---|---|
| Asp 375 | Tyr 375 | conflict |
| Ser 388 | - | expression tag |
| Asp 389 | - | expression tag |
| Pro 390 | - | expression tag |
| Leu 391 | - | expression tag |
| Val 392 | - | expression tag |
| Pro 393 | - | expression tag |
| Arg 394 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 84772.3 | |
| Branched | Number of molecules | 10 |
| Total formula weight | 5865.4 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 2332.2 | |
| All* | Total formula weight | 92969.9 |
