5MRF
Structure of the yeast mitochondrial ribosome - Class C
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 21S ribosomal RNA | polymer | 3296 | 1057789.4 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 2 | B (B) | uL2m | polymer | 393 | 43870.0 | 1 | UniProt (P32611) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein RML2, mitochondrial,L2 |
| 3 | C (C) | uL3m | polymer | 249 | 27528.8 | 1 | UniProt (P31334) Pfam (PF00297) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L9, mitochondrial,YmL9 |
| 4 | D (D) | uL4m | polymer | 252 | 28254.3 | 1 | UniProt (P51998) Pfam (PF00573) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein YmL6, mitochondrial |
| 5 | E (E) | uL5m | polymer | 274 | 31014.5 | 1 | UniProt (P36519) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L7, mitochondrial,YmL5,YmL7 |
| 6 | F (F) | uL6m | polymer | 196 | 21690.1 | 1 | UniProt (P32904) Pfam (PF00347) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L6, mitochondrial,YmL16 |
| 7 | G (G) | bL9m | polymer | 74 | 8763.0 | 1 | UniProt (P53724) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L50, mitochondrial |
| 8 | H (H) | uL13m | polymer | 160 | 18126.0 | 1 | UniProt (Q12487) Pfam (PF00572) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L23, mitochondrial,YmL23 |
| 9 | I (I) | uL14m | polymer | 138 | 14929.7 | 1 | UniProt (P35996) Pfam (PF00238) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L38, mitochondrial,YmL38 |
| 10 | J (J) | uL15m | polymer | 220 | 24765.0 | 1 | UniProt (P36520) Pfam (PF00828) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L10, mitochondrial,YmL10/YmL18 |
| 11 | K (K) | uL16m | polymer | 195 | 22347.0 | 1 | UniProt (P38064) Pfam (PF00252) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L16, mitochondrial,YmL47 |
| 12 | L (L) | bL17m | polymer | 237 | 26858.2 | 1 | UniProt (P22353) Pfam (PF01196) Pfam (PF18502) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L8, mitochondrial,YmL8 |
| 13 | M (M) | bL19m | polymer | 151 | 17179.1 | 1 | UniProt (P25626) Pfam (PF01245) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein IMG1, mitochondrial,Integrity of mitochondrial genome protein 1,PetCR46 |
| 14 | N (N) | bL21m | polymer | 118 | 13507.7 | 1 | UniProt (P40858) Pfam (PF00829) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L49, mitochondrial,YmL49 |
| 15 | O (O) | uL22m | polymer | 225 | 25964.5 | 1 | UniProt (P53881) Pfam (PF00237) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L22, mitochondrial |
| 16 | P (P) | uL23m | polymer | 207 | 24529.1 | 1 | UniProt (P32387) Pfam (PF00276) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L41, mitochondrial,YmL41 |
| 17 | Q (Q) | uL24m | polymer | 296 | 33676.8 | 1 | UniProt (P36534) Pfam (PF00467) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L40, mitochondrial,YmL40 |
| 18 | R (R) | bL27m | polymer | 337 | 39516.3 | 1 | UniProt (P12687) Pfam (PF01016) Pfam (PF18471) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L2, mitochondrial,YMR6,YmL2 |
| 19 | S (S) | bL28m | polymer | 216 | 25193.5 | 1 | UniProt (P36525) Pfam (PF00830) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L24, mitochondrial,YmL14/YmL24 |
| 20 | T (T) | uL29m | polymer | 225 | 26411.0 | 1 | UniProt (P36517) Pfam (PF06984) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L4, mitochondrial,YmL4 |
| 21 | U (U) | uL30m | polymer | 82 | 9088.7 | 1 | UniProt (P20084) Pfam (PF00327) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L33, mitochondrial,YmL33 |
| 22 | V (V) | bL31m | polymer | 177 | 20125.8 | 1 | UniProt (P36531) Pfam (PF21492) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L36, mitochondrial,YmL36 |
| 23 | W (W) | bL32m | polymer | 112 | 13409.7 | 1 | UniProt (P25348) Pfam (PF01783) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L32, mitochondrial,YmL32 |
| 24 | X (X) | bL33m | polymer | 64 | 7275.7 | 1 | UniProt (P36533) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L39, mitochondrial,YmL39 |
| 25 | Y (Y) | bL34m | polymer | 46 | 5465.5 | 1 | UniProt (Q04598) Pfam (PF00468) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L34, mitochondrial,L34mt |
| 26 | Z (Z) | bL35m | polymer | 62 | 7206.6 | 1 | UniProt (P53921) Pfam (PF01632) | Saccharomyces cerevisiae (Baker's yeast) | Putative mitochondrial ribosomal protein YNL122C |
| 27 | AA (0) | bL36m | polymer | 38 | 4653.6 | 1 | UniProt (O14464) Pfam (PF00444) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein RTC6, mitochondrial,Restriction of telomere capping protein 6,Translation associated element 4 |
| 28 | BA (1) | mL38 | polymer | 348 | 40703.5 | 1 | UniProt (Q06678) Pfam (PF01161) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L35, mitochondrial,YmL35 |
| 29 | CA (2) | mL40 | polymer | 113 | 13464.6 | 1 | UniProt (P36527) Pfam (PF09812) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L28, mitochondrial,YmL28 |
| 30 | DA (3) | mL41 | polymer | 130 | 14841.2 | 1 | UniProt (P36526) Pfam (PF09809) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L27, mitochondrial,YmL27 |
| 31 | EA (4) | mL43 | polymer | 138 | 15909.4 | 1 | UniProt (Q06090) Pfam (PF05047) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L51, mitochondrial |
| 32 | FA (5) | mL44 | polymer | 324 | 36326.8 | 1 | UniProt (P36516) Pfam (PF00636) Pfam (PF22892) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L3, mitochondrial,YmL3 |
| 33 | GA (6) | mL46 | polymer | 281 | 32261.7 | 1 | UniProt (P36528) Pfam (PF11788) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L17, mitochondrial,YmL17/YmL30 |
| 34 | HA (7) | mL49 | polymer | 106 | 12182.3 | 1 | UniProt (P25642) Pfam (PF05046) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein IMG2, mitochondrial,Integrity of mitochondrial genome protein 2 |
| 35 | IA (8) | mL50 | polymer | 264 | 30317.4 | 1 | UniProt (Q02204) Pfam (PF10501) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L13, mitochondrial,YmL13 |
| 36 | JA (9) | mL57 | polymer | 215 | 23816.3 | 1 | UniProt (P36523) Pfam (PF00636) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L15, mitochondrial,YmL15 |
| 37 | KA (a) | mL58 | polymer | 177 | 20507.6 | 1 | UniProt (P22354) Pfam (PF12824) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L20, mitochondrial,YmL20 |
| 38 | LA (b) | mL59 | polymer | 155 | 18408.7 | 1 | UniProt (P23369) Pfam (PF18126) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L25, mitochondrial,YmL25 |
| 39 | MA (c) | mL60 | polymer | 119 | 14277.9 | 1 | UniProt (P14063) Pfam (PF09784) | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L31, mitochondrial,YmL31 |
| 40 | NA (d) | mL67 | polymer | 215 | 25712.5 | 1 | UniProt (Q06630) Pfam (PF12829) | Saccharomyces cerevisiae (Baker's yeast) | Mitochondrial homologous recombination protein 1,Cross-linked transcription component 1 |
| 41 | OA (AA) | bS1m | polymer | 344 | 39507.5 | 1 | UniProt (Q02950) Pfam (PF11709) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP51, mitochondrial |
| 42 | PA (BB) | uS2m | polymer | 266 | 29585.3 | 1 | UniProt (P32902) Pfam (PF00318) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP4, mitochondrial |
| 43 | QA (CC) | uS3m | polymer | 398 | 47171.0 | 1 | UniProt (P02381) Pfam (PF05316) | Saccharomyces cerevisiae (Baker's yeast) | Ribosomal protein VAR1, mitochondrial |
| 44 | RA (DD) | uS4m | polymer | 486 | 56450.9 | 1 | UniProt (P27929) Pfam (PF01479) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein NAM9, mitochondrial,Nuclear accommodation of mitochondria protein 9 |
| 45 | SA (EE) | uS5m | polymer | 293 | 33240.1 | 1 | UniProt (P33759) Pfam (PF00333) Pfam (PF03719) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S5, mitochondrial |
| 46 | TA (FF) | bS6m | polymer | 125 | 14311.0 | 1 | UniProt (P28778) Pfam (PF01250) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP17, mitochondrial,YmS16 |
| 47 | UA (GG) | uS7m | polymer | 161 | 18271.3 | 1 | UniProt (P47150) Pfam (PF00177) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S7, mitochondrial |
| 48 | VA (HH) | uS8m | polymer | 154 | 17365.4 | 1 | UniProt (Q03799) Pfam (PF00410) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S8, mitochondrial |
| 49 | WA (II) | uS9m | polymer | 244 | 27960.5 | 1 | UniProt (P38120) Pfam (PF00380) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S9, mitochondrial |
| 50 | XA (JJ) | uS10m | polymer | 186 | 21395.4 | 1 | UniProt (Q03201) Pfam (PF00338) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S10, mitochondrial |
| 51 | YA (KK) | uS11m | polymer | 148 | 16716.6 | 1 | UniProt (P42847) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S18, mitochondrial,YmS18 |
| 52 | ZA (LL) | uS12m | polymer | 124 | 13552.8 | 1 | UniProt (P53732) Pfam (PF00164) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S12, mitochondrial |
| 53 | AB (MM) | uS13m | polymer | 120 | 13474.9 | 1 | UniProt (P53937) Pfam (PF00416) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein SWS2, mitochondrial,Sick without securin protein 2 |
| 54 | BB (NN) | uS14m | polymer | 115 | 13563.1 | 1 | UniProt (P10663) Pfam (PF00253) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP2, mitochondrial |
| 55 | CB (OO) | uS15m | polymer | 253 | 29522.1 | 1 | UniProt (P21771) Pfam (PF00312) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S28, mitochondrial |
| 56 | DB (PP) | bS16m | polymer | 119 | 13402.7 | 1 | UniProt (Q02608) Pfam (PF00886) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S16, mitochondrial |
| 57 | EB (QQ) | uS17m | polymer | 237 | 27684.0 | 1 | UniProt (Q03246) Pfam (PF00366) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S17, mitochondrial |
| 58 | FB (RR) | bS18m | polymer | 99 | 11447.3 | 1 | UniProt (P40033) Pfam (PF01084) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein RSM18, mitochondrial |
| 59 | GB (SS) | uS19m | polymer | 80 | 9037.5 | 1 | UniProt (P53733) Pfam (PF00203) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S19, mitochondrial |
| 60 | HB (TT) | bS21m | polymer | 92 | 10872.7 | 1 | UniProt (P38175) Pfam (PF01165) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP21, mitochondrial |
| 61 | IB (UU) | mS23 | polymer | 233 | 27101.8 | 1 | UniProt (P40496) Pfam (PF13741) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S25, mitochondrial |
| 62 | JB (VV) | mS26 | polymer | 233 | 26737.1 | 1 | UniProt (P17558) Pfam (PF26163) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein PET123, mitochondrial |
| 63 | KB (WW) | mS29 | polymer | 401 | 45650.6 | 1 | UniProt (Q01163) Pfam (PF10236) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S23, mitochondrial,DAP-3 |
| 64 | LB (XX) | mS33 | polymer | 96 | 11031.0 | 1 | UniProt (P53305) Pfam (PF08293) | Saccharomyces cerevisiae (Baker's yeast) | Mitochondrial 37S ribosomal protein S27 |
| 65 | MB (YY) | mS35 | polymer | 273 | 32334.5 | 1 | UniProt (Q03976) Pfam (PF10213) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S24, mitochondrial,Mitochondrial ribosomal small subunit protein 24 |
| 66 | NB (ZZ) | mS37 | polymer | 91 | 10305.1 | 1 | UniProt (O75012) Pfam (PF06747) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP10, mitochondrial,YmS-T |
| 67 | OB (11) | mS38 | polymer | 34 | 4383.5 | 1 | UniProt (P32344) Pfam (PF08213) | Saccharomyces cerevisiae (Baker's yeast) | Mitochondrial mRNA-processing protein COX24 |
| 68 | PB (22) | mS41 | polymer | 99 | 11796.5 | 1 | UniProt (P38783) Pfam (PF09597) | Saccharomyces cerevisiae (Baker's yeast) | Protein FYV4, mitochondrial,Function required for yeast viability protein 4 |
| 69 | QB (33) | mS42 | polymer | 255 | 29036.9 | 1 | UniProt (P47141) Pfam (PF02777) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S26, mitochondrial |
| 70 | RB (44) | mS43 | polymer | 321 | 36775.8 | 1 | UniProt (P10662) Pfam (PF02777) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP1, mitochondrial |
| 71 | SB (55) | mS44 | polymer | 339 | 39045.0 | 1 | UniProt (P12686) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP13, mitochondrial,YmS-A |
| 72 | TB (66) | mS45 | polymer | 319 | 36764.0 | 1 | UniProt (P53292) Pfam (PF12298) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S35, mitochondrial |
| 73 | UB (77) | mS46 | polymer | 165 | 18897.6 | 1 | UniProt (Q03430) | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein RSM28, mitochondrial |
| 74 | VB (88) | mS47 | polymer | 457 | 51367.5 | 1 | UniProt (P28817) Pfam (PF16113) | Saccharomyces cerevisiae (Baker's yeast) | 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial,3-hydroxyisobutyryl-coenzyme A hydrolase,HIBYL-CoA-H |
| 75 | WB (aa) | 15S ribosomal RNA | polymer | 1649 | 528784.1 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 76 | XB (bb) | tRNA | polymer | 76 | 24422.5 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 77 | YB (cc) | unknown protein sequence 1 | polymer | 94 | 8017.9 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 78 | ZB (dd) | unknown protein sequence 2 | polymer | 151 | 12868.9 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 79 | AC, AD, AE, AF, AG... (A, aa, R, BB, LL...) | MAGNESIUM ION | non-polymer | 24.3 | 299 | Chemie (MG) PubChem (888) | |||
| 80 | AJ (B) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) PubChem (923) | |||
| 81 | CJ, DJ (W, 0) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 82 | JJ (WW) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) PubChem (136073927) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 78 |
| Total formula weight | 3317721.6 | |
| Non-Polymers* | Number of molecules | 303 |
| Total formula weight | 7864.2 | |
| All* | Total formula weight | 3325585.8 |
