5MRC
Structure of the yeast mitochondrial ribosome - Class A
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | 21S ribosomal RNA | polymer | 3296 | 1057789.4 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 2 | B | uL2m | polymer | 393 | 43870.0 | 1 | UniProt (P32611) Pfam (PF00181) Pfam (PF03947) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein RML2, mitochondrial,L2 |
| 3 | C | uL3m | polymer | 249 | 27528.8 | 1 | UniProt (P31334) Pfam (PF00297) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L9, mitochondrial,YmL9 |
| 4 | D | uL4m | polymer | 252 | 28254.3 | 1 | UniProt (P51998) Pfam (PF00573) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein YmL6, mitochondrial |
| 5 | E | uL5m | polymer | 274 | 31014.5 | 1 | UniProt (P36519) Pfam (PF00281) Pfam (PF00673) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L7, mitochondrial,YmL5,YmL7 |
| 6 | F | uL6m | polymer | 196 | 21690.1 | 1 | UniProt (P32904) Pfam (PF00347) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L6, mitochondrial,YmL16 |
| 7 | G | bL9m | polymer | 74 | 8763.0 | 1 | UniProt (P53724) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L50, mitochondrial |
| 8 | H | uL13m | polymer | 160 | 18126.0 | 1 | UniProt (Q12487) Pfam (PF00572) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L23, mitochondrial,YmL23 |
| 9 | I | uL14m | polymer | 138 | 14929.7 | 1 | UniProt (P35996) Pfam (PF00238) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L38, mitochondrial,YmL38 |
| 10 | J | uL15m | polymer | 220 | 24765.0 | 1 | UniProt (P36520) Pfam (PF00828) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L10, mitochondrial,YmL10/YmL18 |
| 11 | K | uL16m | polymer | 195 | 22347.0 | 1 | UniProt (P38064) Pfam (PF00252) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L16, mitochondrial,YmL47 |
| 12 | L | bL17m | polymer | 237 | 26858.2 | 1 | UniProt (P22353) Pfam (PF01196) Pfam (PF18502) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L8, mitochondrial,YmL8 |
| 13 | M | bL19m | polymer | 151 | 17179.1 | 1 | UniProt (P25626) Pfam (PF01245) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein IMG1, mitochondrial,Integrity of mitochondrial genome protein 1,PetCR46 |
| 14 | N | bL21m | polymer | 118 | 13507.7 | 1 | UniProt (P40858) Pfam (PF00829) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L49, mitochondrial,YmL49 |
| 15 | O | uL22m | polymer | 225 | 25964.5 | 1 | UniProt (P53881) Pfam (PF00237) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L22, mitochondrial |
| 16 | P | uL23m | polymer | 207 | 24529.1 | 1 | UniProt (P32387) Pfam (PF00276) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L41, mitochondrial,YmL41 |
| 17 | Q | uL24m | polymer | 296 | 33676.8 | 1 | UniProt (P36534) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L40, mitochondrial,YmL40 |
| 18 | R | bL27m | polymer | 337 | 39516.3 | 1 | UniProt (P12687) Pfam (PF01016) Pfam (PF18471) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L2, mitochondrial,YMR6,YmL2 |
| 19 | S | bL28m | polymer | 216 | 25193.5 | 1 | UniProt (P36525) Pfam (PF00830) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L24, mitochondrial,YmL14/YmL24 |
| 20 | T | uL29m | polymer | 225 | 26411.0 | 1 | UniProt (P36517) Pfam (PF06984) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L4, mitochondrial,YmL4 |
| 21 | U | uL30m | polymer | 82 | 9088.7 | 1 | UniProt (P20084) Pfam (PF00327) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L33, mitochondrial,YmL33 |
| 22 | V | bL31m | polymer | 177 | 20125.8 | 1 | UniProt (P36531) Pfam (PF21492) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L36, mitochondrial,YmL36 |
| 23 | W | bL32m | polymer | 112 | 13409.7 | 1 | UniProt (P25348) Pfam (PF01783) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L32, mitochondrial,YmL32 |
| 24 | X | bL33m | polymer | 64 | 7275.7 | 1 | UniProt (P36533) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L39, mitochondrial,YmL39 |
| 25 | Y | bL34m | polymer | 46 | 5465.5 | 1 | UniProt (Q04598) Pfam (PF00468) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L34, mitochondrial,L34mt |
| 26 | Z | bL35m | polymer | 62 | 7206.6 | 1 | UniProt (P53921) Pfam (PF01632) In PDB | Saccharomyces cerevisiae (Baker's yeast) | Putative mitochondrial ribosomal protein YNL122C |
| 27 | 0 | bL36m | polymer | 38 | 4653.6 | 1 | UniProt (O14464) Pfam (PF00444) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein RTC6, mitochondrial,Restriction of telomere capping protein 6,Translation associated element 4 |
| 28 | 1 | mL38 | polymer | 348 | 40703.5 | 1 | UniProt (Q06678) Pfam (PF01161) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L35, mitochondrial,YmL35 |
| 29 | 2 | mL40 | polymer | 113 | 13464.6 | 1 | UniProt (P36527) Pfam (PF09812) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L28, mitochondrial,YmL28 |
| 30 | 3 | mL41 | polymer | 130 | 14841.2 | 1 | UniProt (P36526) Pfam (PF09809) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L27, mitochondrial,YmL27 |
| 31 | 4 | mL43 | polymer | 138 | 15909.4 | 1 | UniProt (Q06090) Pfam (PF05047) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L51, mitochondrial |
| 32 | 5 | mL44 | polymer | 324 | 36326.8 | 1 | UniProt (P36516) Pfam (PF00035) Pfam (PF00636) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L3, mitochondrial,YmL3 |
| 33 | 6 | mL46 | polymer | 281 | 32261.7 | 1 | UniProt (P36528) Pfam (PF11788) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L17, mitochondrial,YmL17/YmL30 |
| 34 | 7 | mL49 | polymer | 106 | 12182.3 | 1 | UniProt (P25642) Pfam (PF05046) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein IMG2, mitochondrial,Integrity of mitochondrial genome protein 2 |
| 35 | 8 | mL50 | polymer | 264 | 30317.4 | 1 | UniProt (Q02204) Pfam (PF10501) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L13, mitochondrial,YmL13 |
| 36 | 9 | mL57 | polymer | 215 | 23816.3 | 1 | UniProt (P36523) Pfam (PF00636) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L15, mitochondrial,YmL15 |
| 37 | a | mL58 | polymer | 177 | 20507.6 | 1 | UniProt (P22354) Pfam (PF12824) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L20, mitochondrial,YmL20 |
| 38 | b | mL59 | polymer | 155 | 18408.7 | 1 | UniProt (P23369) Pfam (PF18126) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L25, mitochondrial,YmL25 |
| 39 | c | mL60 | polymer | 119 | 14277.9 | 1 | UniProt (P14063) Pfam (PF09784) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 54S ribosomal protein L31, mitochondrial,YmL31 |
| 40 | d | mL67 | polymer | 215 | 25712.5 | 1 | UniProt (Q06630) Pfam (PF12829) In PDB | Saccharomyces cerevisiae (Baker's yeast) | Mitochondrial homologous recombination protein 1,Cross-linked transcription component 1 |
| 41 | AA | bS1m | polymer | 344 | 39507.5 | 1 | UniProt (Q02950) Pfam (PF11709) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP51, mitochondrial |
| 42 | BB | uS2m | polymer | 266 | 29585.3 | 1 | UniProt (P32902) Pfam (PF00318) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP4, mitochondrial |
| 43 | CC | uS3m | polymer | 398 | 47171.0 | 1 | UniProt (P02381) Pfam (PF05316) In PDB | Saccharomyces cerevisiae (Baker's yeast) | Ribosomal protein VAR1, mitochondrial |
| 44 | DD | uS4m | polymer | 486 | 56450.9 | 1 | UniProt (P27929) Pfam (PF01479) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein NAM9, mitochondrial,Nuclear accommodation of mitochondria protein 9 |
| 45 | EE | uS5m | polymer | 293 | 33240.1 | 1 | UniProt (P33759) Pfam (PF00333) Pfam (PF03719) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S5, mitochondrial |
| 46 | FF | bS6m | polymer | 125 | 14311.0 | 1 | UniProt (P28778) Pfam (PF01250) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP17, mitochondrial,YmS16 |
| 47 | GG | uS7m | polymer | 161 | 18271.3 | 1 | UniProt (P47150) Pfam (PF00177) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S7, mitochondrial |
| 48 | HH | uS8m | polymer | 154 | 17365.4 | 1 | UniProt (Q03799) Pfam (PF00410) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S8, mitochondrial |
| 49 | II | uS9m | polymer | 244 | 27960.5 | 1 | UniProt (P38120) Pfam (PF00380) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S9, mitochondrial |
| 50 | JJ | uS10m | polymer | 186 | 21395.4 | 1 | UniProt (Q03201) Pfam (PF00338) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S10, mitochondrial |
| 51 | KK | uS11m | polymer | 148 | 16716.6 | 1 | UniProt (P42847) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S18, mitochondrial,YmS18 |
| 52 | LL | uS12m | polymer | 124 | 13552.8 | 1 | UniProt (P53732) Pfam (PF00164) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S12, mitochondrial |
| 53 | MM | uS13m | polymer | 120 | 13474.9 | 1 | UniProt (P53937) Pfam (PF00416) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein SWS2, mitochondrial,Sick without securin protein 2 |
| 54 | NN | uS14m | polymer | 115 | 13563.1 | 1 | UniProt (P10663) Pfam (PF00253) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP2, mitochondrial |
| 55 | OO | uS15m | polymer | 253 | 29522.1 | 1 | UniProt (P21771) Pfam (PF00312) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S28, mitochondrial |
| 56 | PP | bS16m | polymer | 119 | 13402.7 | 1 | UniProt (Q02608) Pfam (PF00886) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S16, mitochondrial |
| 57 | uS17m | polymer | 237 | 27684.0 | 1 | UniProt (Q03246) Pfam (PF00366) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S17, mitochondrial | |
| 58 | RR | bS18m | polymer | 99 | 11447.3 | 1 | UniProt (P40033) Pfam (PF01084) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein RSM18, mitochondrial |
| 59 | SS | uS19m | polymer | 80 | 9037.5 | 1 | UniProt (P53733) Pfam (PF00203) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S19, mitochondrial |
| 60 | TT | bS21m | polymer | 92 | 10872.7 | 1 | UniProt (P38175) Pfam (PF01165) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP21, mitochondrial |
| 61 | UU | mS23 | polymer | 233 | 27101.8 | 1 | UniProt (P40496) Pfam (PF13741) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S25, mitochondrial |
| 62 | VV | mS26 | polymer | 233 | 26737.1 | 1 | UniProt (P17558) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein PET123, mitochondrial |
| 63 | WW | mS29 | polymer | 401 | 45650.6 | 1 | UniProt (Q01163) Pfam (PF10236) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S23, mitochondrial,DAP-3 |
| 64 | XX | mS33 | polymer | 96 | 11031.0 | 1 | UniProt (P53305) Pfam (PF08293) In PDB | Saccharomyces cerevisiae (Baker's yeast) | Mitochondrial 37S ribosomal protein S27 |
| 65 | YY | mS35 | polymer | 273 | 32334.5 | 1 | UniProt (Q03976) Pfam (PF10213) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S24, mitochondrial,Mitochondrial ribosomal small subunit protein 24 |
| 66 | ZZ | mS37 | polymer | 91 | 10305.1 | 1 | UniProt (O75012) Pfam (PF06747) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP10, mitochondrial,YmS-T |
| 67 | 11 | mS38 | polymer | 34 | 4383.5 | 1 | UniProt (P32344) Pfam (PF08213) In PDB | Saccharomyces cerevisiae (Baker's yeast) | Mitochondrial mRNA-processing protein COX24 |
| 68 | 22 | mS41 | polymer | 99 | 11796.5 | 1 | UniProt (P38783) Pfam (PF09597) In PDB | Saccharomyces cerevisiae (Baker's yeast) | Protein FYV4, mitochondrial,Function required for yeast viability protein 4 |
| 69 | 33 | mS42 | polymer | 255 | 29036.9 | 1 | UniProt (P47141) Pfam (PF02777) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S26, mitochondrial |
| 70 | 44 | mS43 | polymer | 321 | 36775.8 | 1 | UniProt (P10662) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP1, mitochondrial |
| 71 | 55 | mS44 | polymer | 339 | 39045.0 | 1 | UniProt (P12686) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein MRP13, mitochondrial,YmS-A |
| 72 | 66 | mS45 | polymer | 319 | 36764.0 | 1 | UniProt (P53292) Pfam (PF12298) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein S35, mitochondrial |
| 73 | 77 | mS46 | polymer | 165 | 18897.6 | 1 | UniProt (Q03430) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 37S ribosomal protein RSM28, mitochondrial |
| 74 | 88 | mS47 | polymer | 457 | 51367.5 | 1 | UniProt (P28817) Pfam (PF16113) In PDB | Saccharomyces cerevisiae (Baker's yeast) | 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial,3-hydroxyisobutyryl-coenzyme A hydrolase,HIBYL-CoA-H |
| 75 | aa | 15S ribosomal RNA | polymer | 1649 | 528784.1 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 76 | bb | tRNA | polymer | 76 | 24422.5 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 77 | cc | unknown protein sequence 1 | polymer | 94 | 8017.9 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 78 | dd | unknown protein sequence 2 | polymer | 151 | 12868.9 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 79 | A, aa, 3, d, BB... | MAGNESIUM ION | non-polymer | 24.3 | 299 | Chemie (MG) | |||
| 80 | B | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 81 | W, 0 | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 82 | WW | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 78 |
| Total formula weight | 3317721.6 | |
| Non-Polymers* | Number of molecules | 303 |
| Total formula weight | 7864.2 | |
| All* | Total formula weight | 3325585.8 |
