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5MFS

The crystal structure of E. coli Aminopeptidase N in complex with 7-amino-4-phenyl-5,7,8,9-tetrahydrobenzocyclohepten-6-one

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Aminopeptidase Npolymer891101441.21UniProt (P04825)
Pfam (PF17900)
Pfam (PF01433)
Pfam (PF11940)
Pfam (PF17432)
Escherichia coliAlpha-aminoacylpeptide hydrolase
2B
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
3C
(A)
[(7~{S})-6,6-bis(oxidanyl)-4-phenyl-5,7,8,9-tetrahydrobenzo[7]annulen-7-yl]azaniumnon-polymer270.31Chemie (7ML)
4D, E, F, G, H...
(A)
SODIUM IONnon-polymer23.09Chemie (NA)
5M, N, O, P, Q
(A)
MALONATE IONnon-polymer102.05Chemie (MLI)
6R, S, T, U, V
(A)
DIMETHYL SULFOXIDEnon-polymer78.15Chemie (DMS)
7W, X, Y, Z
(A)
CHLORIDE IONnon-polymer35.54Chemie (CL)
8AA, BA, CA, DA, EA...
(A)
GLYCEROLnon-polymer92.114Chemie (GOL)
9OA
(A)
waterwater18.01763Chemie (HOH)
Sequence modifications
A: 1 - 870 (UniProt: P04825)
PDBExternal DatabaseDetails
Met -20-initiating methionine
Gly -19-expression tag
Ser -18-expression tag
Ser -17-expression tag
His -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
Ser -10-expression tag
Ser -9-expression tag
Gly -8-expression tag
Glu -7-expression tag
Asn -6-expression tag
Leu -5-expression tag
Tyr -4-expression tag
Phe -3-expression tag
Gln -2-expression tag
Gly -1-expression tag
His 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight101441.2
Non-Polymers*Number of molecules39
Total formula weight2874.7
All*Total formula weight104315.9
*Water molecules are not included.

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PDB entries from 2025-12-17

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