5M1E
Crystal structure of N-terminally tagged UbiD from E. coli reconstituted with prFMN cofactor
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase | polymer | 517 | 57836.8 | 3 | UniProt (P0AAB5) Pfam (PF20695) Pfam (PF01977) Pfam (PF20696) In PDB | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) | Polyprenyl p-hydroxybenzoate decarboxylase |
2 | A, B, C | MANGANESE (II) ION | non-polymer | 54.9 | 3 | Chemie (MN) | |||
3 | A, B, C | (16~{R})-11,12,14,14-tetramethyl-3,5-bis(oxidanylidene)-8-[(2~{S},3~{S},4~{R})-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl]-1,4,6,8-tetrazatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-2(7),9(17),10,12-tetraene-16-sulfonic acid | non-polymer | 606.5 | 3 | Chemie (7D9) | |||
4 | A, B, C | SODIUM ION | non-polymer | 23.0 | 3 | Chemie (NA) | |||
5 | water | water | 18.0 | 130 | Chemie (HOH) |
Sequence modifications
A, B, C: 1 - 497 (UniProt: P0AAB5)
PDB | External Database | Details |
---|---|---|
Met -19 | - | initiating methionine |
Gly -18 | - | expression tag |
Ser -17 | - | expression tag |
Ser -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
His -11 | - | expression tag |
His -10 | - | expression tag |
Ser -9 | - | expression tag |
Ser -8 | - | expression tag |
Gly -7 | - | expression tag |
Leu -6 | - | expression tag |
Val -5 | - | expression tag |
Pro -4 | - | expression tag |
Arg -3 | - | expression tag |
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 173510.5 | |
Non-Polymers* | Number of molecules | 9 |
Total formula weight | 2053.4 | |
All* | Total formula weight | 175563.9 |